U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC17893439 probable galacturonosyltransferase 9 [ Capsella rubella ]

Gene ID: 17893439, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC17893439
Gene description
probable galacturonosyltransferase 9
Locus tag
CARUB_v10013365mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC17893439 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238921.1 (492232..494845)

NW_006238921.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase Praja-2 Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene 6-phosphogluconate dehydrogenase, decarboxylating 3 Neighboring gene zinc finger protein CONSTANS-LIKE 2 Neighboring gene uncharacterized LOC111831399

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_006238921 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable galacturonosyltransferase 9
Names
AT3G02350-like protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238921.1 Reference Caprub1_0

    Range
    492232..494845
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023786000.1 → XP_023641768.1  probable galacturonosyltransferase 9

    UniProtKB/TrEMBL
    R0HKL6
    Conserved Domains (1) summary
    PLN02523
    Location:17 → 561
    PLN02523; galacturonosyltransferase

  2. XM_023786001.1 → XP_023641769.1  probable galacturonosyltransferase 9

    UniProtKB/TrEMBL
    R0HKL6
    Conserved Domains (1) summary
    PLN02523
    Location:17 → 561
    PLN02523; galacturonosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases