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LOC17890815 L-ascorbate peroxidase 3 [ Capsella rubella ]

Gene ID: 17890815, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17890815
Gene description
L-ascorbate peroxidase 3
Locus tag
CARUB_v10014296mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17890815 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238921.1 (12886843..12889528, complement)

NW_006238921.1Genomic Context describing neighboring genes Neighboring gene iron-sulfur assembly protein IscA-like 1, mitochondrial Neighboring gene transcription factor MYB7 Neighboring gene disease resistance protein RML1A-like Neighboring gene disease resistance protein RML1B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238921 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peroxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to oxidative stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in hydrogen peroxide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to reactive oxygen species IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
L-ascorbate peroxidase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238921.1 Reference Caprub1_0

    Range
    12886843..12889528 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006298173.2 → XP_006298235.1  L-ascorbate peroxidase 3

    See identical proteins and their annotated locations for XP_006298235.1

    UniProtKB/TrEMBL
    R0I482
    Conserved Domains (2) summary
    cd00691
    Location:5 → 247
    ascorbate_peroxidase; Ascorbate peroxidases and cytochrome C peroxidases
    PLN02608
    Location:1 → 292
    PLN02608; L-ascorbate peroxidase
Nucleotide Protein
Heading Accession and Version

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