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LOC17890693 galacturonosyltransferase 8 [ Capsella rubella ]

Gene ID: 17890693, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17890693
Gene description
galacturonosyltransferase 8
Locus tag
CARUB_v10013367mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17890693 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238921.1 (9493356..9495498)

NW_006238921.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC17892060 Neighboring gene uncharacterized LOC17892117 Neighboring gene putative G3BP-like protein Neighboring gene ER lumen protein-retaining receptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238921 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galacturonosyltransferase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238921.1 Reference Caprub1_0

    Range
    9493356..9495498
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006297286.2 → XP_006297348.1  galacturonosyltransferase 8

    See identical proteins and their annotated locations for XP_006297348.1

    UniProtKB/TrEMBL
    R0G4E5
    Conserved Domains (2) summary
    cd06429
    Location:251 → 548
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02523
    Location:1 → 561
    PLN02523; galacturonosyltransferase
Nucleotide Protein
Heading Accession and Version

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