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LOC17888233 probable rhamnogalacturonate lyase B [ Capsella rubella ]

Gene ID: 17888233, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17888233
Gene description
probable rhamnogalacturonate lyase B
Locus tag
CARUB_v10022775mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17888233 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238920.1 (680146..685717, complement)

NW_006238920.1Genomic Context describing neighboring genes Neighboring gene KH domain-containing protein HEN4 Neighboring gene kinesin-like protein KIN-14R Neighboring gene dirigent protein 4 Neighboring gene agamous-like MADS-box protein AGL17 Neighboring gene protein BRICK 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238920 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable rhamnogalacturonate lyase B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238920.1 Reference Caprub1_0

    Range
    680146..685717 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006293731.2 → XP_006293793.1  probable rhamnogalacturonate lyase B

    See identical proteins and their annotated locations for XP_006293793.1

    UniProtKB/TrEMBL
    R0FVR0
    Conserved Domains (3) summary
    cd10316
    Location:373 → 472
    RGL4_M; Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
    pfam14683
    Location:482 → 670
    CBM-like; Polysaccharide lyase family 4, domain III
    cl15675
    Location:37 → 242
    RGL4_N; N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase

  2. XM_023784131.1 → XP_023639899.1  probable rhamnogalacturonate lyase B

    UniProtKB/TrEMBL
    R0FVR0
    Conserved Domains (3) summary
    cd10316
    Location:373 → 472
    RGL4_M; Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
    pfam14683
    Location:482 → 670
    CBM-like; Polysaccharide lyase family 4, domain III
    cl15675
    Location:37 → 242
    RGL4_N; N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
Nucleotide Protein
Heading Accession and Version

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