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LOC17886644 cytochrome P450 708A2 [ Capsella rubella ]

Gene ID: 17886644, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17886644
Gene description
cytochrome P450 708A2
Locus tag
CARUB_v10017161mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17886644 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238919.1 (3317184..3320170, complement)

NW_006238919.1Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 59 Neighboring gene BAHD acyltransferase BIA1 Neighboring gene cytochrome P450 708A2 Neighboring gene uncharacterized LOC111830455

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238919 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sterol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytochrome P450 708A2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238919.1 Reference Caprub1_0

    Range
    3317184..3320170 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006290985.2 → XP_006291047.1  cytochrome P450 708A2

    See identical proteins and their annotated locations for XP_006291047.1

    UniProtKB/TrEMBL
    R0HFS3
    Conserved Domains (1) summary
    cl12078
    Location:14 → 470
    p450; Cytochrome P450
Nucleotide Protein
Heading Accession and Version

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