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LOC17886294 galactoside 2-alpha-L-fucosyltransferase [ Capsella rubella ]

Gene ID: 17886294, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17886294
Gene description
galactoside 2-alpha-L-fucosyltransferase
Locus tag
CARUB_v10016945mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17886294 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238919.1 (836845..839114, complement)

NW_006238919.1Genomic Context describing neighboring genes Neighboring gene aspartic proteinase nepenthesin-1 Neighboring gene fucosyltransferase 2 Neighboring gene uncharacterized LOC17886422 Neighboring gene phosphate transporter PHO1 homolog 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238919 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactoside 2-alpha-L-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galactoside 2-alpha-L-fucosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238919.1 Reference Caprub1_0

    Range
    836845..839114 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006290773.2 → XP_006290835.1  galactoside 2-alpha-L-fucosyltransferase

    See identical proteins and their annotated locations for XP_006290835.1

    UniProtKB/TrEMBL
    R0HIQ8
    Conserved Domains (1) summary
    cl16914
    Location:96 → 534
    O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins
Nucleotide Protein
Heading Accession and Version

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