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LOC17885148 polygalacturonate 4-alpha-galacturonosyltransferase [ Capsella rubella ]

Gene ID: 17885148, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17885148
Gene description
polygalacturonate 4-alpha-galacturonosyltransferase
Locus tag
CARUB_v10016785mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17885148 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238919.1 (12810585..12814478)

NW_006238919.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S27-2 Neighboring gene ubiquitin-related modifier 1 homolog 2 Neighboring gene COP9 signalosome complex subunit 1 Neighboring gene homeobox-leucine zipper protein HDG1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238919 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonate 4-alpha-galacturonosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238919.1 Reference Caprub1_0

    Range
    12810585..12814478
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023782272.1 → XP_023638040.1  polygalacturonate 4-alpha-galacturonosyltransferase

    UniProtKB/TrEMBL
    R0FMI3, R0HHE6
    Conserved Domains (1) summary
    cl28622
    Location:20 → 673
    PLN02870; Probable galacturonosyltransferase
Nucleotide Protein
Heading Accession and Version

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