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LOC17884578 O-fucosyltransferase 34 [ Capsella rubella ]

Gene ID: 17884578, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17884578
Gene description
O-fucosyltransferase 34
Locus tag
CARUB_v10000760mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17884578 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238918.1 (5157574..5162263, complement)

NW_006238918.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC17883740 Neighboring gene calcium/calmodulin-regulated receptor-like kinase 2 Neighboring gene U3 small nucleolar ribonucleoprotein protein IMP3 Neighboring gene 30S ribosomal protein 3-2, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238918 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
O-fucosyltransferase 34

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238918.1 Reference Caprub1_0

    Range
    5157574..5162263 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023780616.1 → XP_023636384.1  O-fucosyltransferase 34 isoform X1

  2. XM_006287489.2 → XP_006287551.1  O-fucosyltransferase 34 isoform X2

    See identical proteins and their annotated locations for XP_006287551.1

    UniProtKB/TrEMBL
    R0GU93
    Conserved Domains (2) summary
    cd11299
    Location:109 → 434
    O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
    pfam10250
    Location:112 → 435
    O-FucT; GDP-fucose protein O-fucosyltransferase
Nucleotide Protein
Heading Accession and Version

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