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LOC17884575 cellulose synthase A catalytic subunit 5 [UDP-forming] [ Capsella rubella ]

Gene ID: 17884575, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17884575
Gene description
cellulose synthase A catalytic subunit 5 [UDP-forming]
Locus tag
CARUB_v10000099mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238918.1 (3017595..3023235)

NW_006238918.1Genomic Context describing neighboring genes Neighboring gene SNW/SKI-interacting protein Neighboring gene THO complex subunit 1 Neighboring gene uncharacterized LOC17881147 Neighboring gene RNA-binding protein 39

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238918 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 5 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238918.1 Reference Caprub1_0

    Range
    3017595..3023235
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006286889.2 → XP_006286951.1  cellulose synthase A catalytic subunit 5 [UDP-forming]

    See identical proteins and their annotated locations for XP_006286951.1

    UniProtKB/TrEMBL
    R0GSJ9
    Conserved Domains (4) summary
    PLN02436
    Location:1 → 1068
    PLN02436; cellulose synthase A
    pfam14569
    Location:34 → 97
    zf-UDP; Zinc-binding RING-finger
    cl01503
    Location:875 → 1060
    TrbL; TrbL/VirB6 plasmid conjugal transfer protein
    cl11394
    Location:511 → 819
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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