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LOC17884062 probable mannan synthase 11 [ Capsella rubella ]

Gene ID: 17884062, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17884062
Gene description
probable mannan synthase 11
Locus tag
CARUB_v10000762mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17884062 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238918.1 (5312587..5315932, complement)

NW_006238918.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC17882844 Neighboring gene chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic Neighboring gene uncharacterized LOC17881650 Neighboring gene lisH domain and HEAT repeat-containing protein KIAA1468 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238918 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable mannan synthase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238918.1 Reference Caprub1_0

    Range
    5312587..5315932 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006287491.2 → XP_006287553.1  probable mannan synthase 11

    See identical proteins and their annotated locations for XP_006287553.1

    UniProtKB/TrEMBL
    R0FEW9
    Conserved Domains (2) summary
    cd06437
    Location:77 → 313
    CESA_CaSu_A2; Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex
    pfam13641
    Location:77 → 312
    Glyco_tranf_2_3; Glycosyltransferase like family 2
Nucleotide Protein
Heading Accession and Version

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