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LOC17878579 cellulose synthase A catalytic subunit 2 [UDP-forming] [ Capsella rubella ]

Gene ID: 17878579, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17878579
Gene description
cellulose synthase A catalytic subunit 2 [UDP-forming]
Locus tag
CARUB_v10004034mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17878579 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238917.1 (437040..442912)

NW_006238917.1Genomic Context describing neighboring genes Neighboring gene egg cell-secreted protein 1.4 Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene uncharacterized LOC17879799 Neighboring gene ribonucleoside-diphosphate reductase large subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238917 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 2 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238917.1 Reference Caprub1_0

    Range
    437040..442912
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006282980.2 → XP_006283042.1  cellulose synthase A catalytic subunit 2 [UDP-forming]

    See identical proteins and their annotated locations for XP_006283042.1

    UniProtKB/TrEMBL
    R0GUF9
    Conserved Domains (3) summary
    PLN02436
    Location:1 → 1083
    PLN02436; cellulose synthase A
    pfam14569
    Location:32 → 97
    zf-UDP; Zinc-binding RING-finger
    cl11394
    Location:516 → 834
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases