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LOC17876887 anthocyanidin 3-O-glucoside 2'''-O-xylosyltransferase [ Capsella rubella ]

Gene ID: 17876887, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17876887
Gene description
anthocyanidin 3-O-glucoside 2'''-O-xylosyltransferase
Locus tag
CARUB_v10027945mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17876887 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238916.1 (7992394..7993985, complement)

NW_006238916.1Genomic Context describing neighboring genes Neighboring gene codeine O-demethylase Neighboring gene UDP-glycosyltransferase 79B6 Neighboring gene U5 spliceosomal RNA Neighboring gene B3 domain-containing protein At5g54067

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238916 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anthocyanidin 3-O-glucoside 2'''-O-xylosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238916.1 Reference Caprub1_0

    Range
    7992394..7993985 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006281715.2 → XP_006281777.1  anthocyanidin 3-O-glucoside 2'''-O-xylosyltransferase

    See identical proteins and their annotated locations for XP_006281777.1

    UniProtKB/TrEMBL
    R0GQP5
    Conserved Domains (1) summary
    cl10013
    Location:10 → 469
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
Nucleotide Protein
Heading Accession and Version

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