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LOC17875266 probable beta-1,4-xylosyltransferase IRX14H [ Capsella rubella ]

Gene ID: 17875266, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17875266
Gene description
probable beta-1,4-xylosyltransferase IRX14H
Locus tag
CARUB_v10027753mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17875266 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238916.1 (12857954..12859846, complement)

NW_006238916.1Genomic Context describing neighboring genes Neighboring gene cyclin-D3-2 Neighboring gene F-box protein SKIP2 Neighboring gene small RNA degrading nuclease 3 Neighboring gene tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like Neighboring gene protein IRX15-LIKE

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238916 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX14H

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238916.1 Reference Caprub1_0

    Range
    12857954..12859846 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006281563.2 → XP_006281625.1  probable beta-1,4-xylosyltransferase IRX14H

    See identical proteins and their annotated locations for XP_006281625.1

    UniProtKB/TrEMBL
    R0GTQ9
    Conserved Domains (1) summary
    cd00218
    Location:152 → 417
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis
Nucleotide Protein
Heading Accession and Version

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