ergo-1 Piwi domain-containing protein;Piwi-like protein ergo-1 [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: ergo-1
Official Full Name: Piwi domain-containing protein;Piwi-like protein ergo-1
Primary source: WormBase:WBGene00019971
Locus tag: CELE_R09A1.1
See related: AllianceGenome:WB:WBGene00019971
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Enables DEAD/H-box RNA helicase binding activity and siRNA binding activity. Involved in production of siRNA involved in RNA interference and regulation of production of siRNA involved in RNA interference. Located in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See ergo-1 in Genome Data Viewer

Location:: chromosome: V

Exon count:: 7

Sequence:: Chromosome: V; NC_003283.11 (1008803..1018352)

Chromosome V - NC_003283.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

ERGO-1 recruits a second RNA-dependent RNA polymerases (RRF-1 or EGO-1), which in turn transcribes 22G-RNAs that interact with worm-specific argonautes to direct gene silencing.
Title: Sequential rounds of RNA-dependent RNA transcription drive endogenous small-RNA biogenesis in the ERGO-1/Argonaute pathway.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

R09A1.1 (e-PCR)
- UniSTS:305691

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables DEAD/H-box RNA helicase binding	IPI Inferred from Physical Interaction more info	PubMed
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables RNA endonuclease activity	IBA Inferred from Biological aspect of Ancestor more info
enables miRNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info
enables siRNA binding	IDA Inferred from Direct Assay more info	PubMed
enables single-stranded RNA binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in regulation of translation	IEA Inferred from Electronic Annotation more info
involved_in regulatory ncRNA-mediated gene silencing	IEA Inferred from Electronic Annotation more info
involved_in regulatory ncRNA-mediated post-transcriptional gene silencing	IBA Inferred from Biological aspect of Ancestor more info
involved_in regulatory ncRNA-mediated post-transcriptional gene silencing	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in siRNA processing	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
part_of RISC complex	IBA Inferred from Biological aspect of Ancestor more info
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	IDA Inferred from Direct Assay more info	PubMed
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
is_active_in cytoplasmic ribonucleoprotein granule	IBA Inferred from Biological aspect of Ancestor more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: Piwi domain-containing protein;Piwi-like protein ergo-1

NP_001300164.1

Confirmed by transcript evidence

NP_001300165.1

Confirmed by transcript evidence

NP_001300166.1

Partially confirmed by transcript evidence

NP_503362.2

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003283.11 Reference assembly

Range

1008803..1018352

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_070961.10 → NP_503362.2 Piwi-like protein ergo-1 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_503362.2

Status: REVIEWED

UniProtKB/Swiss-Prot

O61931

Conserved Domains (2) summary

smart00949
Location:421 → 557

PAZ; This domain is named PAZ after the proteins Piwi Argonaut and Zwille

cd04657
Location:588 → 1080

Piwi_ago-like; Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of ...
NM_001313235.3 → NP_001300164.1 Piwi domain-containing protein [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

A0A0K3AY23

Conserved Domains (2) summary

smart00949
Location:14 → 150

PAZ; This domain is named PAZ after the proteins Piwi Argonaut and Zwille

cl00628
Location:181 → 673

Piwi-like; Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The ...
NM_001313236.3 → NP_001300165.1 Piwi domain-containing protein [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

A0A0K3ASS5

Conserved Domains (1) summary

cl00628
Location:30 → 392

Piwi-like; PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component ...
NM_001313237.3 → NP_001300166.1 Piwi domain-containing protein [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

A0A0K3AV28

Conserved Domains (1) summary

cl00628
Location:1 → 269

Piwi-like; PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component ...