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F49C12.12 DUF1648 domain-containing protein;Ribonuclease kappa [ Caenorhabditis elegans ]

Gene ID: 177755, updated on 18-Sep-2024

Summary

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Official Symbol
F49C12.12
Official Full Name
DUF1648 domain-containing protein;Ribonuclease kappa
Primary source
WormBase:WBGene00009881
Locus tag
CELE_F49C12.12
See related
AllianceGenome:WB:WBGene00009881
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable endoribonuclease activity. Predicted to be involved in RNA phosphodiester bond hydrolysis, endonucleolytic. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RNASEK (ribonuclease K). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See F49C12.12 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
3
Sequence:
Chromosome: IV; NC_003282.8 (9320122..9321089, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene UBA domain-containing protein Neighboring gene 26S proteasome non-ATPase regulatory subunit 6 Neighboring gene Methyltransferase type 11 domain-containing protein Neighboring gene Translation machinery-associated protein 7 homolog Neighboring gene V-type proton ATPase subunit e Neighboring gene DUF19 domain-containing protein Neighboring gene Serine/arginine repetitive matrix protein 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA endonuclease activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in nucleic acid metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DUF1648 domain-containing protein;Ribonuclease kappa
NP_001294041.1
  • Confirmed by transcript evidence
NP_501635.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    9320122..9321089 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069234.7 → NP_501635.1  Ribonuclease kappa [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501635.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q20589

  2. NM_001307112.3 → NP_001294041.1  DUF1648 domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294041.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    X5LX67
Nucleotide Protein
Heading Accession and Version

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