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svop-1 Putative transporter svop-1 [ Caenorhabditis elegans ]

Gene ID: 176250, updated on 18-Sep-2024

Summary

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Official Symbol
svop-1
Official Full Name
Putative transporter svop-1
Primary source
WormBase:WBGene00014021
Locus tag
CELE_ZK637.1
See related
AllianceGenome:WB:WBGene00014021
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SVOP (SV2 related protein). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See svop-1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
10
Sequence:
Chromosome: III; NC_003281.10 (8882707..8885482, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene FAM161 homolog famh-136 Neighboring gene putative RING finger protein ZK637.14 Neighboring gene Protein linkin Neighboring gene Uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bioinformatic identification of cytochrome b5 homologues from the parasitic nematode Ascaris suum and the free-living nematode Caenorhabditis elegans highlights the crucial role of A. suum adult-specific secretory cytochrome b₅ in parasitic adaptation. Takamiya S, et al. Parasitol Int, 2016 Apr. PMID 26571414
  2. Computational evidence support the hypothesis of neuroglobin also acting as an electron transfer species. Paltrinieri L, et al. J Biol Inorg Chem, 2017 Jun. PMID 28378164
  3. A redox signalling globin is essential for reproduction in Caenorhabditis elegans. De Henau S, et al. Nat Commun, 2015 Dec 1. PMID 26621324, Free PMC Article
  4. A globin domain in a neuronal transmembrane receptor of Caenorhabditis elegans and Ascaris suum: molecular modeling and functional properties. Tilleman L, et al. J Biol Chem, 2015 Apr 17. PMID 25666609, Free PMC Article
  5. GLB-13 is associated with oxidative stress resistance in Caenorhabditis elegans. Ren C, et al. IUBMB Life, 2013 May. PMID 23508993

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Putative transporter svop-1
NP_498960.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    8882707..8885482 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_066559.8 → NP_498960.2  Putative transporter svop-1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_498960.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P30638, Q21101
    Conserved Domains (2) summary
    cd06174
    Location:87 → 508
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    TIGR00898
    Location:16 → 514
    2A0119; cation transport protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P30638.5

Gene LinkOut

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