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OTSA alpha,alpha-trehalose-phosphate synthase (UDP-forming) [ Nannochloropsis gaditana CCMP526 ]

Gene ID: 17359732, updated on 17-Feb-2024

Summary

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Gene symbol
OTSA
Gene description
alpha,alpha-trehalose-phosphate synthase (UDP-forming)
Locus tag
NGA_0581820
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Nannochloropsis gaditana CCMP526 (strain: CCMP526)
Lineage
Eukaryota; Sar; Stramenopiles; Ochrophyta; Eustigmatophyceae; Eustigmatales; Monodopsidaceae; Nannochloropsis
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Genomic context

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See OTSA in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_005802612.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005802612.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase (UDP-forming)
XP_005852433.1
  • a similar gene NGA_0581810 is located in the genomic assembly and may represent a gene duplication, repeat region, or error in the assembly

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_005802612.1 Reference assembly

    Range
    50..3112
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005852371.1 → XP_005852433.1  alpha,alpha-trehalose-phosphate synthase (UDP-forming) [Nannochloropsis gaditana CCMP526]

    See identical proteins and their annotated locations for XP_005852433.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    K8YXH8, W7TBU1
    Conserved Domains (3) summary
    cd03788
    Location:49 → 525
    GT1_TPS; Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a ...
    PRK14501
    Location:49 → 780
    PRK14501; putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
    pfam02358
    Location:560 → 767
    Trehalose_PPase; Trehalose-phosphatase
Nucleotide Protein
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