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CHC_T00009209001 Putative carnitine/acylcarnitine translocase [ Chondrus crispus (carragheen) ]

Gene ID: 17323421, updated on 16-Nov-2023

Summary

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Gene symbol
CHC_T00009209001
Gene description
Putative carnitine/acylcarnitine translocase
Locus tag
CHC_T00009209001
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Chondrus crispus (strain: Stackhouse)
Lineage
Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniophycidae; Gigartinales; Gigartinaceae; Chondrus
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Genomic context

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Exon count:
4

NW_005179101.1Genomic Context describing neighboring genes Neighboring gene Translation initiation factor eIF2, subunit beta Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene Glycosyltransferase, family GT7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005179101.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida. Collén J, et al. Proc Natl Acad Sci U S A, 2013 Mar 26. PMID 23503846, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

3'UTR

  • Loc: c118180-117845

5'UTR

  • Loc: c118995-118994

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ornithine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial L-ornithine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Putative carnitine/acylcarnitine translocase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_005179101.1 Reference assembly

    Range
    117845..118995 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005715654.1 → XP_005715711.1  Putative carnitine/acylcarnitine translocase, partial [Chondrus crispus]

    See identical proteins and their annotated locations for XP_005715711.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    R7QBL3
    Conserved Domains (1) summary
    pfam00153
    Location:140 → 233
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein
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Gene LinkOut

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