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CHC_T00008222001 hypothetical protein [ Chondrus crispus (carragheen) ]

Gene ID: 17320098, updated on 16-Nov-2023

Summary

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Gene symbol
CHC_T00008222001
Gene description
hypothetical protein
Locus tag
CHC_T00008222001
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Chondrus crispus (strain: Stackhouse)
Lineage
Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniophycidae; Gigartinales; Gigartinaceae; Chondrus
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Genomic context

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Exon count:
1

NW_005178874.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005178874.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida. Collén J, et al. Proc Natl Acad Sci U S A, 2013 Mar 26. PMID 23503846, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,4-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_005178874.1 Reference assembly

    Range
    158434..160071 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005712326.1 → XP_005712383.1  unnamed protein product [Chondrus crispus]

    See identical proteins and their annotated locations for XP_005712383.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    R7Q201
    Conserved Domains (1) summary
    pfam13632
    Location:233 → 382
    Glyco_trans_2_3; Glycosyl transferase family group 2
Nucleotide Protein
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Gene LinkOut

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