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TOP DNA topoisomerase [ Emiliania huxleyi CCMP1516 ]

Gene ID: 17266155, updated on 28-Dec-2023

Summary

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Gene symbol
TOP
Gene description
DNA topoisomerase
Locus tag
EMIHUDRAFT_310561
Gene type
protein coding
RNA name
DNA topoisomerase
RefSeq status
PROVISIONAL
Organism
Emiliania huxleyi CCMP1516 (strain: CCMP1516)
Lineage
Eukaryota; Haptophyceae; Isochrysidales; Noelaerhabdaceae; Emiliania
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Genomic context

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Location:
chromosome: Unknown
Exon count:
3

NW_005199363.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene putative inorganic phosphate transporter Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005199363.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Pan genome of the phytoplankton Emiliania underpins its global distribution. Read BA, et al. Nature, 2013 Jul 11. PMID 23760476
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA topological change IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
DNA topoisomerase
XP_005773037.1
  • Chromatin unwinding and binding

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_005199363.1 Reference assembly

    Range
    796441..799215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005772980.1 → XP_005773037.1  DNA topoisomerase [Emiliania huxleyi CCMP1516]

    See identical proteins and their annotated locations for XP_005773037.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7S3TYZ9, R1CCZ8
    Conserved Domains (4) summary
    PRK05560
    Location:1 → 820
    PRK05560; DNA gyrase subunit A; Validated
    cd00187
    Location:14 → 464
    TOP4c; DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA ...
    pfam03989
    Location:648 → 697
    DNA_gyraseA_C; DNA gyrase C-terminal domain, beta-propeller
    sd00041
    Location:494 → 541
    GyrA-ParC_C; GyrA_CTD repeat [structural motif]
Nucleotide Protein
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