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C30F12.2 ATPase N2B [ Caenorhabditis elegans ]

Gene ID: 172427, updated on 12-Jun-2024

Summary

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Gene symbol
C30F12.2
Gene description
ATPase N2B
Locus tag
CELE_C30F12.2
See related
AllianceGenome:WB:WBGene00016261
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable ATP hydrolysis activity. Predicted to be active in mitochondrion. Is expressed in several structures, including anal depressor muscle; hypodermis; intestine; nervous system; and reproductive system. Orthologous to human AFG1L (AFG1 like ATPase). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See C30F12.2 in Genome Data Viewer
Location:
chromosome: I
Exon count:
9
Sequence:
Chromosome: I; NC_003279.8 (6967670..6970145, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Putative pterin-4-alpha-carbinolamine dehydratase Neighboring gene BACK domain-containing protein Neighboring gene Endoribonuclease rege-1 Neighboring gene Conserved plasma membrane protein Neighboring gene LITAF domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ATPase N2B
NP_491986.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    6967670..6970145 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059585.6 → NP_491986.1  ATPase N2B [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491986.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q95YE1
    Conserved Domains (2) summary
    COG1485
    Location:19 → 432
    YhcM; Predicted ATPase [General function prediction only]
    cl21455
    Location:19 → 437
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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