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Mcf2l mcf.2 transforming sequence-like [ Mus musculus (house mouse) ]

Gene ID: 17207, updated on 14-Nov-2024

Summary

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Official Symbol
Mcf2lprovided by MGI
Official Full Name
mcf.2 transforming sequence-likeprovided by MGI
Primary source
MGI:MGI:103263
See related
Ensembl:ENSMUSG00000031442 AllianceGenome:MGI:103263
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Dbs; Ost; mKIAA0362; C130040G20Rik
Summary
Enables 1-phosphatidylinositol binding activity and guanyl-nucleotide exchange factor activity. Acts upstream of or within Rho protein signal transduction and positive regulation of transcription by RNA polymerase II. Located in lamellipodium and membrane. Is expressed in several structures, including brain; liver; retina; right atrium; and testis. Orthologous to human MCF2L (MCF.2 cell line derived transforming sequence like). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in CNS E18 (RPKM 14.7), frontal lobe adult (RPKM 13.1) and 22 other tissues See more
Orthologs
human all
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Genomic context

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See Mcf2l in Genome Data Viewer
Location:
8 A1.1; 8 5.73 cM
Exon count:
37
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (12923806..13070502)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (12873806..13020502)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_20748 Neighboring gene predicted gene, 33587 Neighboring gene ATPase, class VI, type 11A Neighboring gene predicted gene 15350 Neighboring gene predicted gene 15353 Neighboring gene STARR-seq mESC enhancer starr_20752 Neighboring gene predicted gene 15351 Neighboring gene STARR-seq mESC enhancer starr_20754 Neighboring gene microRNA 9768 Neighboring gene predicted gene, 53398 Neighboring gene CD24a antigen pseudogene Neighboring gene coagulation factor VII

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Retroviral transduction and oncogenic selection of a cDNA encoding Dbs, a homolog of the Dbl guanine nucleotide exchange factor. Whitehead I, et al. Oncogene, 1995 Feb 16. PMID 7862449
  2. Distinct expression patterns and transforming properties of multiple isoforms of Ost, an exchange factor for RhoA and Cdc42. Lorenzi MV, et al. Oncogene, 1999 Aug 19. PMID 10467422
  3. Critical role of the pleckstrin homology domain in Dbs signaling and growth regulation. Fuentes EJ, et al. J Biol Chem, 2003 Jun 6. PMID 12637530
  4. The Dbs PH domain contributes independently to membrane targeting and regulation of guanine nucleotide-exchange activity. Baumeister MA, et al. Biochem J, 2006 Dec 15. PMID 17007612, Free PMC Article
  5. Crystal structure of the DH/PH fragment of Dbs without bound GTPase. Worthylake DK, et al. Structure, 2004 Jun. PMID 15274927

See all (44) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. miR-140-3p exhibits repressive functions on preosteoblast viability and differentiation by downregulating MCF2L in osteoporosis.
    Title: miR-140-3p exhibits repressive functions on preosteoblast viability and differentiation by downregulating MCF2L in osteoporosis.
  2. Crystal structure of the DH/PH fragment of Dbs without bound GTPase
    Title: Crystal structure of the DH/PH fragment of Dbs without bound GTPase.
  3. Dbs has the potential to promote proliferation of immature thymocytes, but also sensitizes immature thymocytes to deletion.
    Title: The RhoA- and CDC42-specific exchange factor Dbs promotes expansion of immature thymocytes and deletion of double-positive and single-positive thymocytes.
  4. Dbs is activated by Rac1 at the pleckstrin homology domain
    Title: Pleckstrin homology domain-mediated activation of the rho-specific guanine nucleotide exchange factor Dbs by Rac1.
  5. the Sec14 domain regulates Dbs transformation through at least two distinct mechanisms, neither of which appears to directly influence the in vivo exchange activity of the protein
    Title: The Sec14 homology domain regulates the cellular distribution and transforming activity of the Rho-specific guanine nucleotide exchange factor Dbs.
  6. the PH domain of Dbs has two roles in the regulation of DH domain function, one for GTPase association and activation in vitro and one for phosphoinositide binding and GTPase interaction in vivo, that together promote Dbs association with membranes.
    Title: Critical role of the pleckstrin homology domain in Dbs signaling and growth regulation.
  7. the PH domain of Dbs has a role in regulating Rho GTPase activation
    Title: Multifunctional roles for the PH domain of Dbs in regulating Rho GTPase activation.
  8. Dbs transformation is associated with increased phosphorylation of myosin light chain and stress fiber formation, both of which occur in a ROCK-dependent manner
    Title: Transformation by the Rho-specific guanine nucleotide exchange factor Dbs requires ROCK I-mediated phosphorylation of myosin light chain.
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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Gene trapped (1) 
  • Targeted (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables 1-phosphatidylinositol binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables guanyl-nucleotide exchange factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables guanyl-nucleotide exchange factor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables guanyl-nucleotide exchange factor activity ISO
Inferred from Sequence Orthology
more info
  
enables phosphatidylinositol binding ISO
Inferred from Sequence Orthology
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within Rho protein signal transduction IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in intracellular signal transduction ISO
Inferred from Sequence Orthology
more info
  
involved_in intracellular signal transduction ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in positive regulation of Rho protein signal transduction ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in endomembrane system ISO
Inferred from Sequence Orthology
more info
  
located_in extrinsic component of cytoplasmic side of plasma membrane ISO
Inferred from Sequence Orthology
more info
  
located_in lamellipodium IDA
Inferred from Direct Assay
more info
 PubMed 
located_in membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
guanine nucleotide exchange factor DBS
Names
DBL's big sister
MCF2-transforming sequence-like protein
Ost gamma
exchange factor for RhoA and Cdc42
guanine nucleotide exchange factor OSTIII

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001159485.2 → NP_001152957.1  guanine nucleotide exchange factor DBS isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR and 5' and 3' coding regions, compared to variant 1, resulting in an isoform (3) that has distinct N- and C-termini and is shorter than isoform 1.
    Source sequence(s)
    AC127308
    Consensus CDS
    CCDS52483.1
    UniProtKB/TrEMBL
    E9PY13, Q003U3
    Related
    ENSMUSP00000106490.3, ENSMUST00000110866.9
    Conserved Domains (6) summary
    cd11857
    Location:1007 → 1061
    SH3_DBS; Src homology 3 domain of DBL's Big Sister (DBS), a guanine nucleotide exchange factor
    smart00516
    Location:24 → 169
    SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
    cd00160
    Location:581 → 758
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cd00176
    Location:300 → 502
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cd01227
    Location:765 → 896
    PH_Dbs; DBL's big sister protein pleckstrin homology (PH) domain
    pfam00169
    Location:779 → 893
    PH; PH domain

  2. NM_001159486.2 → NP_001152958.1  guanine nucleotide exchange factor DBS isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and 5' coding region, and lacks two alternate in-frame exons in the 3' coding region, compared to variant 1, resulting in an isoform (2) that has a distinct N-terminus and is shorter than isoform 1.
    Source sequence(s)
    AC127308
    Consensus CDS
    CCDS52482.1
    UniProtKB/TrEMBL
    E9PY12, Q003U3
    Related
    ENSMUSP00000106491.3, ENSMUST00000110867.9
    Conserved Domains (6) summary
    cd11857
    Location:1007 → 1061
    SH3_DBS; Src homology 3 domain of DBL's Big Sister (DBS), a guanine nucleotide exchange factor
    smart00516
    Location:24 → 169
    SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
    cd00160
    Location:581 → 758
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cd00176
    Location:300 → 502
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cd01227
    Location:765 → 896
    PH_Dbs; DBL's big sister protein pleckstrin homology (PH) domain
    pfam00169
    Location:779 → 893
    PH; PH domain

  3. NM_001371043.1 → NP_001357972.1  guanine nucleotide exchange factor DBS isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC127308, AC134581
    Consensus CDS
    CCDS90372.1
    UniProtKB/Swiss-Prot
    E9PV70, Q64096
    UniProtKB/TrEMBL
    E9QPM7
    Related
    ENSMUSP00000093108.4, ENSMUST00000095456.10
    Conserved Domains (5) summary
    cd11857
    Location:1059 → 1113
    SH3_DBS; Src homology 3 domain of DBL's Big Sister (DBS), a guanine nucleotide exchange factor
    smart00516
    Location:76 → 221
    SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
    cd00160
    Location:633 → 810
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cd00176
    Location:352 → 554
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cd01227
    Location:817 → 948
    PH_Dbs; DBL's big sister protein pleckstrin homology (PH) domain

  4. NM_001371044.1 → NP_001357973.1  guanine nucleotide exchange factor DBS isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC127308
    UniProtKB/TrEMBL
    E9PXE1
    Related
    ENSMUSP00000106503.3, ENSMUST00000110879.9
    Conserved Domains (5) summary
    cd11857
    Location:1054 → 1108
    SH3_DBS; Src homology 3 domain of DBL's Big Sister (DBS), a guanine nucleotide exchange factor
    smart00516
    Location:46 → 191
    SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
    cd00160
    Location:603 → 780
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cd00176
    Location:322 → 524
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cd01227
    Location:787 → 918
    PH_Dbs; DBL's big sister protein pleckstrin homology (PH) domain

  5. NM_001371045.1 → NP_001357974.1  guanine nucleotide exchange factor DBS isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC127308
    UniProtKB/TrEMBL
    Q003U3
    Related
    ENSMUSP00000106495.2, ENSMUST00000110871.8
    Conserved Domains (5) summary
    cd11857
    Location:1027 → 1081
    SH3_DBS; Src homology 3 domain of DBL's Big Sister (DBS), a guanine nucleotide exchange factor
    smart00516
    Location:44 → 189
    SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
    cd00160
    Location:601 → 778
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cd00176
    Location:320 → 522
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cd01227
    Location:785 → 916
    PH_Dbs; DBL's big sister protein pleckstrin homology (PH) domain

  6. NM_001371046.1 → NP_001357975.1  guanine nucleotide exchange factor DBS isoform 7

    Status: VALIDATED

    Source sequence(s)
    AC127308
    UniProtKB/TrEMBL
    E9PXE1
    Conserved Domains (5) summary
    cd11857
    Location:1025 → 1079
    SH3_DBS; Src homology 3 domain of DBL's Big Sister (DBS), a guanine nucleotide exchange factor
    smart00516
    Location:17 → 162
    SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
    cd00160
    Location:574 → 751
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cd00176
    Location:293 → 495
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cd01227
    Location:758 → 889
    PH_Dbs; DBL's big sister protein pleckstrin homology (PH) domain

  7. NM_001371047.1 → NP_001357976.1  guanine nucleotide exchange factor DBS isoform 8

    Status: VALIDATED

    Source sequence(s)
    AC127308
    UniProtKB/TrEMBL
    Q6PDM6
    Conserved Domains (5) summary
    cd11857
    Location:1054 → 1108
    SH3_DBS; Src homology 3 domain of DBL's Big Sister (DBS), a guanine nucleotide exchange factor
    smart00516
    Location:46 → 191
    SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
    cd00160
    Location:603 → 780
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cd00176
    Location:322 → 524
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cd01227
    Location:787 → 918
    PH_Dbs; DBL's big sister protein pleckstrin homology (PH) domain

  8. NM_001371048.1 → NP_001357977.1  guanine nucleotide exchange factor DBS isoform 9

    Status: VALIDATED

    Source sequence(s)
    AC127308
    UniProtKB/TrEMBL
    Q6PDM6
    Conserved Domains (5) summary
    cd11857
    Location:1083 → 1137
    SH3_DBS; Src homology 3 domain of DBL's Big Sister (DBS), a guanine nucleotide exchange factor
    smart00516
    Location:44 → 189
    SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
    cd00160
    Location:601 → 778
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cd00176
    Location:320 → 522
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cd01227
    Location:785 → 916
    PH_Dbs; DBL's big sister protein pleckstrin homology (PH) domain

  9. NM_001371049.1 → NP_001357978.1  guanine nucleotide exchange factor DBS isoform 10

    Status: VALIDATED

    Description
    Transcript Variant: This variant (10) encodes the longest isoform (10).
    Source sequence(s)
    AC127308
    UniProtKB/TrEMBL
    E9PXE1
    Related
    ENSMUSP00000133577.2, ENSMUST00000145067.8
    Conserved Domains (5) summary
    cd11857
    Location:1082 → 1136
    SH3_DBS; Src homology 3 domain of DBL's Big Sister (DBS), a guanine nucleotide exchange factor
    smart00516
    Location:46 → 191
    SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
    cd00160
    Location:603 → 780
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cd00176
    Location:322 → 524
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cd01227
    Location:787 → 918
    PH_Dbs; DBL's big sister protein pleckstrin homology (PH) domain

  10. NM_001371050.1 → NP_001357979.1  guanine nucleotide exchange factor DBS isoform 11

    Status: VALIDATED

    Source sequence(s)
    AC127308
    UniProtKB/TrEMBL
    Q003U3
    Related
    ENSMUSP00000096528.4, ENSMUST00000098927.10
    Conserved Domains (5) summary
    cd11857
    Location:1033 → 1087
    SH3_DBS; Src homology 3 domain of DBL's Big Sister (DBS), a guanine nucleotide exchange factor
    smart00516
    Location:50 → 195
    SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
    cd00160
    Location:607 → 784
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cd00176
    Location:326 → 528
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cd01227
    Location:791 → 922
    PH_Dbs; DBL's big sister protein pleckstrin homology (PH) domain

  11. NM_178076.4 → NP_835177.2  guanine nucleotide exchange factor DBS isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes isoform 1.
    Source sequence(s)
    AC127308
    Consensus CDS
    CCDS40225.2
    UniProtKB/TrEMBL
    E9PXE2, Q6PDM6
    Related
    ENSMUSP00000106500.3, ENSMUST00000110876.9
    Conserved Domains (6) summary
    cd11857
    Location:1085 → 1139
    SH3_DBS; Src homology 3 domain of DBL's Big Sister (DBS), a guanine nucleotide exchange factor
    smart00516
    Location:46 → 191
    SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
    cd00160
    Location:603 → 780
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cd00176
    Location:322 → 524
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cd01227
    Location:787 → 918
    PH_Dbs; DBL's big sister protein pleckstrin homology (PH) domain
    pfam00169
    Location:801 → 915
    PH; PH domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    12923806..13070502
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q64096.2 GenPept UniProtKB/Swiss-Prot:Q64096

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