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Spata19 spermatogenesis associated 19 [ Rattus norvegicus (Norway rat) ]

Gene ID: 171403, updated on 17-Aug-2024

Summary

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Official Symbol
Spata19provided by RGD
Official Full Name
spermatogenesis associated 19provided by RGD
Primary source
RGD:620628
See related
EnsemblRapid:ENSRNOG00000031438 AllianceGenome:RGD:620628
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Spas1; spergen-1
Summary
Predicted to be involved in cell differentiation and spermatogenesis. Predicted to be located in mitochondrial outer membrane. Orthologous to human SPATA19 (spermatogenesis associated 19). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward (RPKM 905.4) See more
Orthologs
human mouse all
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Genomic context

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Location:
8q13
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (34057130..34079097)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (25814922..25820663)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (28454938..28460645)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD113/SNORD114 family Neighboring gene uncharacterized LOC120094099 Neighboring gene uncharacterized LOC134480005 Neighboring gene immunoglobulin superfamily, member 9B Neighboring gene opioid binding protein/cell adhesion molecule-like Neighboring gene endothelial differentiation-related factor 1, pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Complementary DNA cloning and characterization of rat spergen-1, a spermatogenic cell-specific gene-1, containing a mitochondria-targeting signal. Doiguchi M, et al. Biol Reprod, 2002 May. PMID 11967211
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
  
involved_in sperm mitochondrion organization IEA
Inferred from Electronic Annotation
more info
  
involved_in sperm mitochondrion organization ISO
Inferred from Sequence Orthology
more info
  
involved_in sperm mitochondrion organization ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in spermatogenesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrial outer membrane ISO
Inferred from Sequence Orthology
more info
  
located_in mitochondrial outer membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 
located_in sperm flagellum ISO
Inferred from Sequence Orthology
more info
  
located_in sperm flagellum ISS
Inferred from Sequence or Structural Similarity
more info
  
is_active_in sperm midpiece IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in sperm midpiece IEA
Inferred from Electronic Annotation
more info
  
located_in sperm midpiece ISO
Inferred from Sequence Orthology
more info
  
located_in sperm midpiece ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
spermatogenesis-associated protein 19, mitochondrial
Names
spermatogenic cell-specific gene 1 protein
spermatogenic specific-gene1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_134384.1 → NP_599211.1  spermatogenesis-associated protein 19, mitochondrial precursor

    See identical proteins and their annotated locations for NP_599211.1

    Status: PROVISIONAL

    Source sequence(s)
    AB057408
    UniProtKB/Swiss-Prot
    Q920Q3
    UniProtKB/TrEMBL
    A6JYE3, F1M9B7
    Related
    ENSRNOP00000040918.5, ENSRNOT00000051573.6
    Conserved Domains (1) summary
    pfam15212
    Location:25 → 154
    SPATA19; Spermatogenesis-associated protein 19, mitochondrial

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    34057130..34079097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063264838.1 → XP_063120908.1  spermatogenesis-associated protein 19, mitochondrial isoform X1

    UniProtKB/Swiss-Prot
    Q920Q3
    UniProtKB/TrEMBL
    A6JYE3, F1M9B7
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q920Q3.1 GenPept UniProtKB/Swiss-Prot:Q920Q3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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