U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

nitr6a novel immune-type receptor 6a [ Danio rerio (zebrafish) ]

Gene ID: 170984, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
nitr6aprovided by ZNC
Official Full Name
novel immune-type receptor 6aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-020225-42
See related
Ensembl:ENSDARG00000076846 AllianceGenome:ZFIN:ZDB-GENE-020225-42
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
nitr6.1; nitr6.3; nitr6.4; nitr6.8; nitr6.12; nitr6b_3; zgc:123065; si:dz150l22.5; si:dz263j20.3; si:dz219h16.15
Summary
Predicted to be involved in response to bacterium. Predicted to be located in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See nitr6a in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (17624189..17627260, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (17372216..17375287, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene novel immune-type receptor 5 Neighboring gene novel immune-type receptor 4a Neighboring gene novel immune-type receptor 4b, pseudogene Neighboring gene uncharacterized LOC137496253 Neighboring gene novel immune-type receptor 6b

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Developmental and tissue-specific expression of NITRs. Yoder JA, et al. Immunogenetics, 2010 Feb. PMID 20012603, Free PMC Article
  2. The medaka novel immune-type receptor (NITR) gene clusters reveal an extraordinary degree of divergence in variable domains. Desai S, et al. BMC Evol Biol, 2008 Jun 19. PMID 18565225, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC123065

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in response to bacterium IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
novel immune-type receptor 6a
Names
novel immune-type receptor 6.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199130.3 → NP_954581.3  novel immune-type receptor 6a precursor

    See identical proteins and their annotated locations for NP_954581.3

    Status: PROVISIONAL

    Source sequence(s)
    BC107497
    UniProtKB/TrEMBL
    Q3B7R5
    Related
    ENSDARP00000092476.4, ENSDART00000101701.5
    Conserved Domains (2) summary
    smart00410
    Location:26 → 126
    IG_like; Immunoglobulin like
    pfam07686
    Location:29 → 126
    V-set; Immunoglobulin V-set domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    17624189..17627260 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools