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Khdrbs2 KH domain containing, RNA binding, signal transduction associated 2 [ Mus musculus (house mouse) ]

Gene ID: 170771, updated on 2-Nov-2024

Summary

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Official Symbol
Khdrbs2provided by MGI
Official Full Name
KH domain containing, RNA binding, signal transduction associated 2provided by MGI
Primary source
MGI:MGI:2159649
See related
Ensembl:ENSMUSG00000026058 AllianceGenome:MGI:2159649
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Slm1; Slim1; Slm-1; mSLM-1; TG-RP135; 6330586C16Rik; Tg(LRRK2*R1441G)135Cjli
Summary
The protein encoded by this gene is similar to the src associated in mitosis, 68 kDa protein, which is an RNA-binding protein and a substrate for Src-family tyrosine kinases during mitosis. This protein has a KH RNA-binding motif and proline-rich motifs which may be SH2 and SH3 domain binding sites. A similar rat protein is an RNA-binding protein which is tyrosine phosphorylated by Src during mitosis. These studies also suggest that the rat protein may function as an adaptor protein for Src by binding the SH2 and SH3 domains of various other proteins. [provided by RefSeq, Jul 2008]
Expression
Biased expression in CNS E18 (RPKM 5.5), whole brain E14.5 (RPKM 5.1) and 6 other tissues See more
Orthologs
human all
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Genomic context

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See Khdrbs2 in Genome Data Viewer
Location:
1 B; 1 11.86 cM
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (32211683..32744305)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (32172602..32705224)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_00522 Neighboring gene voltage-dependent anion channel 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_00523 Neighboring gene STARR-seq mESC enhancer starr_00524 Neighboring gene predicted gene, 51754 Neighboring gene predicted gene, 25814 Neighboring gene 40S ribosomal protein S28 pseudogene Neighboring gene STARR-seq mESC enhancer starr_00527 Neighboring gene predicted gene 9839 Neighboring gene SUMO/sentrin specific peptidase 2-like 1 Neighboring gene STARR-seq mESC enhancer starr_00528 Neighboring gene predicted gene, 24732 Neighboring gene STARR-seq mESC enhancer starr_00529 Neighboring gene STARR-seq mESC enhancer starr_00530 Neighboring gene STARR-seq mESC enhancer starr_00531 Neighboring gene STARR-seq mESC enhancer starr_00532 Neighboring gene SET domain containing 3 pseudogene Neighboring gene family with sequence similarity 192, member A pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Mutant LRRK2(R1441G) BAC transgenic mice recapitulate cardinal features of Parkinson's disease. Li Y, et al. Nat Neurosci, 2009 Jul. PMID 19503083, Free PMC Article
  2. An early axonopathy in a hLRRK2(R1441G) transgenic model of Parkinson disease. Tagliaferro P, et al. Neurobiol Dis, 2015 Oct. PMID 26192625, Free PMC Article
  3. A novel mitochondrially-targeted apocynin derivative prevents hyposmia and loss of motor function in the leucine-rich repeat kinase 2 (LRRK2(R1441G)) transgenic mouse model of Parkinson's disease. Dranka BP, et al. Neurosci Lett, 2014 Nov 7. PMID 25263790, Free PMC Article
  4. Diapocynin prevents early Parkinson's disease symptoms in the leucine-rich repeat kinase 2 (LRRK2R¹⁴⁴¹G) transgenic mouse. Dranka BP, et al. Neurosci Lett, 2013 Aug 9. PMID 23721786, Free PMC Article
  5. Skeletal muscle LIM protein 1 regulates integrin-mediated myoblast adhesion, spreading, and migration. Robinson PA, et al. Am J Physiol Cell Physiol, 2003 Mar. PMID 12397030

See all (38) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Deletion of SLM2 modifies alternative splicing of its paralog Slm1 and stabilizes its mRNA in hippocampus.
    Title: Alternative splicing coupled nonsense-mediated decay generates neuronal cell type-specific expression of SLM proteins.
  2. Cell type-specific expression of SLM1 provides a mechanism for shaping the molecular repertoires of synaptic adhesion molecules in neuronal populations in vivo.
    Title: Neuronal cell type-specific alternative splicing is regulated by the KH domain protein SLM1.
  3. expression of active BRK/Sik results in increased SLM-1 and SLM-2 phosphorylation which has functional relevance and leads to inhibition of their RNA-binding
    Title: The nuclear tyrosine kinase BRK/Sik phosphorylates and inhibits the RNA-binding activities of the Sam68-like mammalian proteins SLM-1 and SLM-2.
  4. SLIM1 localizes in an integrin-dependent manner to the nucleus and focal adhesions where it functions downstream of integrin activation to promote cell spreading and migration.
    Title: Skeletal muscle LIM protein 1 regulates integrin-mediated myoblast adhesion, spreading, and migration.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables SH2 domain binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables SH3 domain binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables poly(A) binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables poly(A) binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables poly(U) RNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of alternative mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of mRNA splicing, via spliceosome IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus TAS
Traceable Author Statement
more info
 PubMed 

General protein information

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Preferred Names
KH domain-containing, RNA-binding, signal transduction-associated protein 2
Names
LRRK2<R1441G>
Sam68-like mammalian protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133235.3 → NP_573498.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2

    See identical proteins and their annotated locations for NP_573498.1

    Status: REVIEWED

    Source sequence(s)
    AC122027, AC124771, AC125216, AC140214
    Consensus CDS
    CCDS14861.1
    UniProtKB/Swiss-Prot
    Q6NXZ3, Q9WU01
    Related
    ENSMUSP00000027226.6, ENSMUST00000027226.12
    Conserved Domains (3) summary
    cd02395
    Location:61 → 180
    SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
    pfam16274
    Location:6 → 57
    Qua1; Qua1 domain
    pfam16568
    Location:267 → 321
    Sam68-YY; Tyrosine-rich domain of Sam68

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    32211683..32744305
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036162453.1 → XP_036018346.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    Conserved Domains (2) summary
    pfam16274
    Location:5 → 57
    Qua1; Qua1 domain
    cl00098
    Location:54 → 171
    KH-I; K homology (KH) RNA-binding domain, type I

RNA

  1. XR_004940680.1 RNA Sequence

  2. XR_004940681.1 RNA Sequence

  3. XR_001783141.2 RNA Sequence

  4. XR_373242.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9WU01.1 GenPept UniProtKB/Swiss-Prot:Q9WU01

Gene LinkOut

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