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Atp13a1 ATPase type 13A1 [ Mus musculus (house mouse) ]

Gene ID: 170759, updated on 28-Oct-2024

Summary

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Official Symbol
Atp13a1provided by MGI
Official Full Name
ATPase type 13A1provided by MGI
Primary source
MGI:MGI:2180801
See related
Ensembl:ENSMUSG00000031862 AllianceGenome:MGI:2180801
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
catp; Atp13a; Cgi152
Summary
Predicted to enable ATPase-coupled monoatomic cation transmembrane transporter activity; P-type ion transporter activity; and membrane protein dislocase activity. Predicted to be involved in extraction of mislocalized protein from ER membrane; intracellular calcium ion homeostasis; and transmembrane transport. Located in endoplasmic reticulum membrane. Orthologous to human ATP13A1 (ATPase 13A1). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Ubiquitous expression in thymus adult (RPKM 77.4), ovary adult (RPKM 67.7) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Atp13a1 in Genome Data Viewer
Location:
8 B3.3; 8 33.88 cM
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (70243813..70260399)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (69791163..69807749)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_21745 Neighboring gene predicted gene, 19893 Neighboring gene zinc finger protein 866 Neighboring gene STARR-positive B cell enhancer ABC_E6643 Neighboring gene STARR-positive B cell enhancer ABC_E6644 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:72332338-72332525 Neighboring gene Gem-interacting protein Neighboring gene predicted gene, 33695 Neighboring gene lysophosphatidic acid receptor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Endoplasmic Reticulum ATP13A1 is Essential for MAVS-Mediated Antiviral Innate Immunity. Zhang R, et al. Adv Sci (Weinh), 2022 Nov. PMID 36216581, Free PMC Article
  2. Atp13a2 Deficiency Aggravates Astrocyte-Mediated Neuroinflammation via NLRP3 Inflammasome Activation. Qiao C, et al. CNS Neurosci Ther, 2016 Jun. PMID 26848562, Free PMC Article
  3. Exacerbation of sensorimotor dysfunction in mice deficient in Atp13a2 and overexpressing human wildtype alpha-synuclein. Dirr ER, et al. Behav Brain Res, 2018 May 2. PMID 29407413, Free PMC Article
  4. Parkinson disease related ATP13A2 evolved early in animal evolution. Sørensen DM, et al. PLoS One, 2018. PMID 29505581, Free PMC Article
  5. Characterization of the P5 subfamily of P-type transport ATPases in mice. Schultheis PJ, et al. Biochem Biophys Res Commun, 2004 Oct 22. PMID 15381061

See all (25) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The Endoplasmic Reticulum ATP13A1 is Essential for MAVS-Mediated Antiviral Innate Immunity.
    Title: The Endoplasmic Reticulum ATP13A1 is Essential for MAVS-Mediated Antiviral Innate Immunity.
  2. Double mutant mice with loss of Atp13a2 function combined with overexpression of human wildtype aSyn showed an earlier onset and accelerated alterations in sensorimotor function that were age, sex and test-dependent. Female 13a2-aSyn mice showed early and progressive dysfunction on the beam and in locomotor activity. In males, 13a2-aSyn mice showed more severe impairments in spontaneous activity and adhesive removal.
    Title: Exacerbation of sensorimotor dysfunction in mice deficient in Atp13a2 and overexpressing human wildtype alpha-synuclein.
  3. This study revealed a novel role of ATP13A2 in modulating astrocyte-mediated neuroinflammation via NLRP3 inflammasome activation.
    Title: Atp13a2 Deficiency Aggravates Astrocyte-Mediated Neuroinflammation via NLRP3 Inflammasome Activation.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (4) 

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATPase-coupled monoatomic cation transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables P-type ion transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables P-type transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables membrane protein dislocase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables membrane protein dislocase activity ISO
Inferred from Sequence Orthology
more info
  
enables membrane protein dislocase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in extraction of mislocalized protein from ER membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in extraction of mislocalized protein from ER membrane ISO
Inferred from Sequence Orthology
more info
  
involved_in extraction of mislocalized protein from ER membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in intracellular calcium ion homeostasis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
  
involved_in transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in endoplasmic reticulum membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
endoplasmic reticulum transmembrane helix translocase
Names
cation-transporting ATPase 2
endoplasmic reticulum P5A-ATPase
manganese-transporting ATPase 13A1
probable cation-transporting ATPase 13A1
NP_573487.2
XP_006509627.1
XP_030099178.1
XP_030099179.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133224.2 → NP_573487.2  endoplasmic reticulum transmembrane helix translocase

    See identical proteins and their annotated locations for NP_573487.2

    Status: VALIDATED

    Source sequence(s)
    AC157564, AK052057
    Consensus CDS
    CCDS22349.1
    UniProtKB/Swiss-Prot
    B2RS54, Q9EPE9
    UniProtKB/TrEMBL
    Q69Z96
    Related
    ENSMUSP00000034326.7, ENSMUST00000034326.7
    Conserved Domains (5) summary
    COG4087
    Location:828 → 881
    COG4087; Soluble P-type ATPase [General function prediction only]
    TIGR01657
    Location:82 → 1169
    P-ATPase-V; P-type ATPase of unknown pump specificity (type V)
    pfam00122
    Location:295 → 507
    E1-E2_ATPase; E1-E2 ATPase
    pfam12710
    Location:640 → 762
    HAD; haloacid dehalogenase-like hydrolase
    pfam13246
    Location:581 → 664
    Cation_ATPase; Cation transport ATPase (P-type)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    70243813..70260399
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006509564.4 → XP_006509627.1  endoplasmic reticulum transmembrane helix translocase isoform X1

    UniProtKB/TrEMBL
    Q69Z96
    Conserved Domains (1) summary
    cd07543
    Location:211 → 1130
    P-type_ATPase_cation; P-type cation-transporting ATPases, similar to human cation-transporting ATPase type 13A1 (ATP13A1) and Saccharomyces manganese-transporting ATPase 1 Spf1p

  2. XM_030243318.1 → XP_030099178.1  endoplasmic reticulum transmembrane helix translocase isoform X2

    Conserved Domains (1) summary
    cl21460
    Location:29 → 696
    HAD_like; Haloacid Dehalogenase-like Hydrolases

  3. XM_030243319.1 → XP_030099179.1  endoplasmic reticulum transmembrane helix translocase isoform X3

    Conserved Domains (1) summary
    cl21460
    Location:1 → 621
    HAD_like; Haloacid Dehalogenase-like Hydrolases

RNA

  1. XR_003947239.1 RNA Sequence

    Related
    ENSMUST00000238453.2
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9EPE9.2 GenPept UniProtKB/Swiss-Prot:Q9EPE9

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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