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GAPDHP2 glyceraldehyde-3-phosphate dehydrogenase pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 170516, updated on 17-Sep-2024

Summary

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Official Symbol
GAPDHP2provided by HGNC
Official Full Name
glyceraldehyde-3-phosphate dehydrogenase pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:16577
See related
AllianceGenome:HGNC:16577
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GAPDP2; dJ585I14.1
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Genomic context

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See GAPDHP2 in Genome Data Viewer
Location:
20p12.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (13392614..13393877)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (13436033..13437296)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (13373261..13374524)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene taspase 1 Neighboring gene Sharpr-MPRA regulatory region 1935 Neighboring gene Sharpr-MPRA regulatory region 7489 Neighboring gene ISM1 antisense RNA 1 Neighboring gene isthmin 1 Neighboring gene uncharacterized LOC124904872 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr20:13337123-13337628 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:13338225-13339146 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:13342069-13342904 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:13342905-13343739 Neighboring gene mitochondrial ribosomal protein S36 pseudogene 6 Neighboring gene NANOG hESC enhancer GRCh37_chr20:13516637-13517168 Neighboring gene Sharpr-MPRA regulatory region 15076 Neighboring gene Sharpr-MPRA regulatory region 9064 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:13618936-13619436 Neighboring gene Sharpr-MPRA regulatory region 128 Neighboring gene ESF1 nucleolar pre-rRNA processing protein homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_001038.5 

    Range
    101..1364
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    13392614..13393877
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    13436033..13437296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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