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COCSUDRAFT_30401 hypothetical protein [ Coccomyxa subellipsoidea C-169 ]

Gene ID: 17038633, updated on 28-Dec-2023

Summary

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Gene symbol
COCSUDRAFT_30401
Gene description
hypothetical protein
Locus tag
COCSUDRAFT_30401
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Coccomyxa subellipsoidea C-169 (strain: C-169)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Coccomyxaceae; Coccomyxa
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Genomic context

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Exon count:
15

NW_005178029.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene potassium ion uptake transporter Neighboring gene 5-methylaminomethyl-2-thiouridylate-methyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005178029.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Blanc G, et al. Genome Biol, 2012 May 25. PMID 22630137, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_005178029.1 Reference assembly

    Range
    165244..173423 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005645141.1 → XP_005645198.1  hypothetical protein COCSUDRAFT_30401 [Coccomyxa subellipsoidea C-169]

    See identical proteins and their annotated locations for XP_005645198.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    I0YQI5
    Conserved Domains (4) summary
    sd00006
    Location:671 → 701
    TPR; TPR repeat [structural motif]
    pfam13374
    Location:713 → 754
    TPR_10; Tetratricopeptide repeat
    pfam13424
    Location:668 → 746
    TPR_12; Tetratricopeptide repeat
    sd00044
    Location:462 → 489
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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