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COCSUDRAFT_31457 nucleotide-diphospho-sugar transferase [ Coccomyxa subellipsoidea C-169 ]

Gene ID: 17036802, updated on 28-Dec-2023

Summary

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Gene symbol
COCSUDRAFT_31457
Gene description
nucleotide-diphospho-sugar transferase
Locus tag
COCSUDRAFT_31457
Gene type
protein coding
RNA name
nucleotide-diphospho-sugar transferase
RefSeq status
PROVISIONAL
Organism
Coccomyxa subellipsoidea C-169 (strain: C-169)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Coccomyxaceae; Coccomyxa
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Genomic context

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Exon count:
7

NW_005178022.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005178022.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Blanc G, et al. Genome Biol, 2012 May 25. PMID 22630137, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl-phosphate beta-D-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dolichol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
nucleotide-diphospho-sugar transferase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_005178022.1 Reference assembly

    Range
    298215..301140
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005643339.1 → XP_005643396.1  nucleotide-diphospho-sugar transferase [Coccomyxa subellipsoidea C-169]

    See identical proteins and their annotated locations for XP_005643396.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    I0YKD3
    Conserved Domains (2) summary
    cd06442
    Location:12 → 239
    DPM1_like; DPM1_like represents putative enzymes similar to eukaryotic DPM1
    PLN02726
    Location:1 → 243
    PLN02726; dolichyl-phosphate beta-D-mannosyltransferase
Nucleotide Protein
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