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CYME_CMT204C 4-alpha-glucanotransferase [ Cyanidioschyzon merolae strain 10D ]

Gene ID: 16997711, updated on 21-Dec-2023

Summary

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Gene symbol
CYME_CMT204C
Gene description
4-alpha-glucanotransferase
Locus tag
CYME_CMT204C
Gene type
protein coding
RNA name
4-alpha-glucanotransferase
RefSeq status
PROVISIONAL
Organism
Cyanidioschyzon merolae strain 10D (strain: 10D)
Lineage
Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae; Cyanidioschyzon
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Genomic context

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See CYME_CMT204C in Genome Data Viewer
Location:
chromosome: 20
Exon count:
1
Sequence:
Chromosome: 20; NC_010146.1 (518505..521387, complement)

Chromosome 20 - NC_010146.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene similar to aspartyl protease Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010146.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae. Nozaki H, et al. BMC Biol, 2007 Jul 10. PMID 17623057, Free PMC Article
  2. Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Matsuzaki M, et al. Nature, 2004 Apr 8. PMID 15071595

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4-alpha-glucanotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
4-alpha-glucanotransferase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_010146.1 Reference assembly

    Range
    518505..521387 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005539172.1 → XP_005539229.1  4-alpha-glucanotransferase [Cyanidioschyzon merolae strain 10D]

    See identical proteins and their annotated locations for XP_005539229.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    M1VMF5
    Conserved Domains (3) summary
    PLN02950
    Location:2 → 949
    PLN02950; 4-alpha-glucanotransferase
    pfam02446
    Location:291 → 948
    Glyco_hydro_77; 4-alpha-glucanotransferase
    cl15347
    Location:176 → 275
    CBM20; The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is ...
Nucleotide Protein
Heading Accession and Version

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