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CNBD1 cyclic nucleotide binding domain containing 1 [ Homo sapiens (human) ]

Gene ID: 168975, updated on 3-Apr-2024

Summary

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Official Symbol
CNBD1provided by HGNC
Official Full Name
cyclic nucleotide binding domain containing 1provided by HGNC
Primary source
HGNC:HGNC:26663
See related
Ensembl:ENSG00000176571 AllianceGenome:HGNC:26663
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.9) See more
Orthologs
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Genomic context

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See CNBD1 in Genome Data Viewer
Location:
8q21.3
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (86866415..87428652)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (87987207..88551974)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (87878643..88395087)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide gated channel subunit beta 3 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:87706251-87706896 Neighboring gene UBE2Q2 pseudogene 10 Neighboring gene uncharacterized LOC107986895 Neighboring gene NANOG hESC enhancer GRCh37_chr8:87980781-87981282 Neighboring gene NANOG hESC enhancer GRCh37_chr8:88152834-88153335 Neighboring gene NANOG hESC enhancer GRCh37_chr8:88208643-88209144 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:88354821-88355336 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:88437867-88438368 Neighboring gene IARS2 pseudogene 1 Neighboring gene vesicle trafficking 1 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. [The influence of calcineurin gene polymorphism on morphofunctional characteristics of cardiovascular system of athletes]. Akhmetov II, et al. Ross Fiziol Zh Im I M Sechenova, 2008 Aug. PMID 18825932
  2. Genetic variants associated with disordered eating. Wade TD, et al. Int J Eat Disord, 2013 Sep. PMID 23568457, Free PMC Article
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. Rose JE, et al. Mol Med, 2010 Jul-Aug. PMID 20379614, Free PMC Article
  4. Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei. Fasci D, et al. Mol Cell Proteomics, 2018 Oct. PMID 30021884, Free PMC Article
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)
    Title: Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.
  2. Observational study of gene-disease association. (HuGE Navigator)
    Title: [The influence of calcineurin gene polymorphism on morphofunctional characteristics of cardiovascular system of athletes].
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genetic variants associated with disordered eating.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ35802

General protein information

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Preferred Names
cyclic nucleotide-binding domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173538.3 → NP_775809.1  cyclic nucleotide-binding domain-containing protein 1

    See identical proteins and their annotated locations for NP_775809.1

    Status: VALIDATED

    Source sequence(s)
    AC090572, AC100799, BC117328
    Consensus CDS
    CCDS55259.1
    UniProtKB/Swiss-Prot
    Q8NA66
    UniProtKB/TrEMBL
    H0YC59
    Related
    ENSP00000430073.1, ENST00000518476.6
    Conserved Domains (1) summary
    cd00038
    Location:331 → 434
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    86866415..87428652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047421411.1 → XP_047277367.1  cyclic nucleotide-binding domain-containing protein 1 isoform X2

  2. XM_024447082.2 → XP_024302850.1  cyclic nucleotide-binding domain-containing protein 1 isoform X1

  3. XM_017013149.2 → XP_016868638.1  cyclic nucleotide-binding domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    H0YC59
    Related
    ENSP00000430986.2, ENST00000523299.6

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    87987207..88551974
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054359872.1 → XP_054215847.1  cyclic nucleotide-binding domain-containing protein 1 isoform X3

  2. XM_054359870.1 → XP_054215845.1  cyclic nucleotide-binding domain-containing protein 1 isoform X1

  3. XM_054359871.1 → XP_054215846.1  cyclic nucleotide-binding domain-containing protein 1 isoform X2

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8NA66.1 GenPept UniProtKB/Swiss-Prot:Q8NA66

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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