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Lgals1 lectin, galactose binding, soluble 1 [ Mus musculus (house mouse) ]

Gene ID: 16852, updated on 2-Nov-2024

Summary

Official Symbol
Lgals1provided by MGI
Official Full Name
lectin, galactose binding, soluble 1provided by MGI
Primary source
MGI:MGI:96777
See related
Ensembl:ENSMUSG00000068220 AllianceGenome:MGI:96777
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
L14; Gal-1; Galbp; L-14.5; Lect14; galectin-1
Summary
Enables carbohydrate binding activity. Acts upstream of or within T cell costimulation; myoblast differentiation; and plasma cell differentiation. Located in extracellular space. Is expressed in several structures, including cardiovascular system; embryo mesenchyme; genitourinary system; main olfactory bulb; and olfactory system. Orthologous to human LGALS1 (galectin 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in subcutaneous fat pad adult (RPKM 1022.5), genital fat pad adult (RPKM 721.2) and 17 other tissues See more
Orthologs
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Genomic context

See Lgals1 in Genome Data Viewer
Location:
15 E1; 15 37.7 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (78810925..78814665)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (78926725..78930465)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene SH3-domain binding protein 1 Neighboring gene STARR-positive B cell enhancer ABC_E480 Neighboring gene pyridoxal (pyridoxine, vitamin B6) phosphatase Neighboring gene predicted gene, 30368 Neighboring gene STARR-positive B cell enhancer ABC_E10867 Neighboring gene nucleolar protein 12 Neighboring gene TRIO and F-actin binding protein Neighboring gene STARR-positive B cell enhancer ABC_E8975 Neighboring gene predicted gene 10865 Neighboring gene microRNA 6956

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 
  • Targeted (2)  1 citation

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables carbohydrate binding IDA
Inferred from Direct Assay
more info
PubMed 
enables galactose binding NAS
Non-traceable Author Statement
more info
PubMed 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables lactose binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables lactose binding ISO
Inferred from Sequence Orthology
more info
 
enables laminin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables laminin binding ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables receptor ligand activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within T cell costimulation IDA
Inferred from Direct Assay
more info
PubMed 
involved_in apoptotic process IEA
Inferred from Electronic Annotation
more info
 
involved_in cell-cell adhesion ISO
Inferred from Sequence Orthology
more info
 
involved_in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules NAS
Non-traceable Author Statement
more info
PubMed 
NOT involved_in maintenance of protein location IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within myoblast differentiation IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of T-helper 17 cell lineage commitment IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of cell-substrate adhesion ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of neuron projection development ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within plasma cell differentiation IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of erythrocyte aggregation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of inflammatory response ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of viral entry into host cell IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of viral entry into host cell ISO
Inferred from Sequence Orthology
more info
 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cell surface ISO
Inferred from Sequence Orthology
more info
 
located_in collagen-containing extracellular matrix HDA PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in extracellular region TAS
Traceable Author Statement
more info
 
located_in extracellular space HDA PubMed 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in extracellular space IDA
Inferred from Direct Assay
more info
PubMed 
part_of galectin complex ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
galectin-1
Names
14 kDa lectin
S-Lac lectin 1
beta-galactoside binding protein
beta-galactoside-binding lectin L-14-I
galaptin
lactose-binding lectin 1
lectin galactoside-binding soluble 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008495.2NP_032521.1  galectin-1

    See identical proteins and their annotated locations for NP_032521.1

    Status: VALIDATED

    Source sequence(s)
    BE956470, X66532
    Consensus CDS
    CCDS27628.1
    UniProtKB/Swiss-Prot
    P05163, P11946, P16045, P17601, Q4FZH4, Q99M27, Q9D0X0
    Related
    ENSMUSP00000086795.6, ENSMUST00000089377.6
    Conserved Domains (1) summary
    smart00276
    Location:11135
    GLECT; Galectin

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    78810925..78814665
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)