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petB cytochrome B [ Bordetella parapertussis 12822 ]

Gene ID: 1667000, discontinued on 6-Feb-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:

Summary

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Gene symbol
petB
Gene description
cytochrome B
Locus tag
BPP4284
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bordetella parapertussis 12822 (strain: 12822)
Lineage
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella
Also known as
cytB
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Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002928.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Miscellaneous features

  • Loc: 4618711-4619331 HMMPfam hit to PF00033, Cytochrome b(N-terminal)/b6/petB, score 1.7e-84
  • Loc: 4618795-4618863, 4618960-4619028, 4619047-4619115, 4619143-4619211, 4619248-4619316, 4619419-4619487, 4619617-4619673, 4619683-4619736, 4619755-4619814, 4619857-4619913, 4619932-4620000) 11 probable transmembrane helices predicted for BPP4284 by TMHMM2.0 at aa 41-63, 96-118, 125-147, 157-179, 192-214, 249-271, 315-333, 337-354, 361-380, 395-413 and 420-442
  • Loc: 4618924-4618959 PS00192 Cytochrome b/b6 heme-ligand signature.

General protein information

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Names
cytochrome B
NP_886413.1
  • ortholog of Bordetella pertussis (BX470248) BP0276

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002928.3 Reference assembly

    Range
    4618675..4620057
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_886413.1 cytochrome B [Bordetella parapertussis 12822]

    Status: PROVISIONAL

Nucleotide Protein
Heading Accession and Version