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TAF9P3 TATA-box binding protein associated factor 9 pseudogene 3 [ Homo sapiens (human) ]

Gene ID: 163088, updated on 17-Sep-2024

Summary

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Official Symbol
TAF9P3provided by HGNC
Official Full Name
TATA-box binding protein associated factor 9 pseudogene 3provided by HGNC
Primary source
HGNC:HGNC:30678
See related
AllianceGenome:HGNC:30678
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TAF2GL
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Genomic context

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See TAF9P3 in Genome Data Viewer
Location:
19q12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (30037256..30038393)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (32557666..32558806)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (30528163..30529300)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr19:30418723-30419224 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr19:30419225-30419724 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14423 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10473 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14424 Neighboring gene peptidylprolyl isomerase A pseudogene 58 Neighboring gene VISTA enhancer hs381 Neighboring gene URI1 prefoldin like chaperone Neighboring gene ribosomal protein L9 pseudogene 32 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10474 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14425 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30521325-30521824 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14426 Neighboring gene VISTA enhancer hs382 Neighboring gene uncharacterized LOC107985271 Neighboring gene VISTA enhancer hs721 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14427 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30583442-30583972 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30583973-30584501 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:30589624-30589867 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30607607-30608158 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30608159-30608708 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:30648008-30648968 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10475 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30714014-30714514 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30714515-30715015 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10476 Neighboring gene VISTA enhancer hs858 Neighboring gene VISTA enhancer hs383 Neighboring gene zinc finger protein 536 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:30811773-30812272 Neighboring gene VISTA enhancer hs430 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr19:30864335-30864836 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30866004-30866504 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30875860-30876360 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:30948561-30949071 Neighboring gene VISTA enhancer hs384 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31042441-31042941 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:31044111-31044612 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31055005-31055756 Neighboring gene uncharacterized LOC124904685

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mapping and mutational analysis of the human TAF2G gene encoding a p53 cofactor. Evans SC, et al. Genomics, 1999 Apr 1. PMID 10191103

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene 3
  • TBP-associated factor 9 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_001012.6 

    Range
    101..1238
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    30037256..30038393
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    32557666..32558806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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