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LINC02907 long intergenic non-protein coding RNA 2907 [ Homo sapiens (human) ]

Gene ID: 157927, updated on 5-Mar-2024

Summary

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Official Symbol
LINC02907provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2907provided by HGNC
Primary source
HGNC:HGNC:28581
See related
Ensembl:ENSG00000178243 AllianceGenome:HGNC:28581
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C9orf62
Expression
Low expression observed in reference dataset See more
Orthologs
all
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Genomic context

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See LINC02907 in Genome Data Viewer
Location:
9q34.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (135343249..135346562)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (147567675..147570988)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (138235095..138238408)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138078411-138079170 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138079171-138079930 Neighboring gene uncharacterized LOC401557 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr9:138089981-138090638 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr9:138090639-138091296 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138110575-138111150 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138111151-138111726 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138111727-138112301 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29292 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138114640-138115217 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138115797-138116374 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138116375-138116952 Neighboring gene uncharacterized LOC107987138 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138142531-138143102 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138152625-138153124 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138174821-138175368 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138176843-138177509 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138189455-138190251 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138234136-138234848 Neighboring gene uncharacterized LOC124902304 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138255629-138256130 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138262192-138262744 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138262745-138263296 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138269127-138270064 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138284516-138285183 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:138308518-138308686 Neighboring gene uncharacterized LOC124902305

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Systematic interactome mapping of acute lymphoblastic leukemia cancer gene products reveals EXT-1 tumor suppressor as a Notch1 and FBWX7 common interactor. Daakour S, et al. BMC Cancer, 2016 May 26. PMID 27229929, Free PMC Article
  2. Histone deacetylase inhibitors inhibit cervical cancer growth through Parkin acetylation-mediated mitophagy. Sun X, et al. Acta Pharm Sin B, 2022 Feb. PMID 35256949, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC35463

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171012.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL353615
    Related
    ENST00000623103.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    135343249..135346562
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    147567675..147570988
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_173520.3: Suppressed sequence

    Description
    NM_173520.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version

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