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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001159627.1 → NP_001153099.1 hephaestin isoform 1 precursor
See identical proteins and their annotated locations for NP_001153099.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) represents use of an alternate promoter, compared to variant 1, and enocdes the longest isoform (1). Both variants 1 and 3 encode the same isoform.
- Source sequence(s)
-
AF082567, AK129194, CJ053588
- Consensus CDS
-
CCDS30289.1
- UniProtKB/Swiss-Prot
- A2AI63, Q6ZQ65, Q80Y80, Q8C4S2, Q9Z0Z4
- Related
- ENSMUSP00000109469.2, ENSMUST00000113838.8
- Conserved Domains (5) summary
-
- cd04222
Location:26 → 208
- CuRO_1_ceruloplasmin; The first cupredoxin domain of Ceruloplasmin
- cd04224
Location:377 → 571
- CuRO_3_ceruloplasmin; The third cupredoxin domain of Ceruloplasmin
- cd04225
Location:732 → 903
- CuRO_5_ceruloplasmin; The fifth cupredoxin domain of Ceruloplasmin
- cd11021
Location:223 → 363
- CuRO_2_ceruloplasmin; The second cupredoxin domain of Ceruloplasmin
- cl19115
Location:574 → 717
- Cupredoxin; Cupredoxin superfamily
-
NM_001159628.1 → NP_001153100.1 hephaestin isoform 3 precursor
See identical proteins and their annotated locations for NP_001153100.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) uses an alternate splice site in the 3' coding region, compared to variant 1. The resulting isoform (3) lacks one internal amino acid near the C-terminus, compared to isoform 1.
- Source sequence(s)
-
AL732365
- UniProtKB/Swiss-Prot
-
Q9Z0Z4
- Conserved Domains (5) summary
-
- cd04222
Location:26 → 208
- CuRO_1_ceruloplasmin; The first cupredoxin domain of Ceruloplasmin
- cd04224
Location:377 → 571
- CuRO_3_ceruloplasmin; The third cupredoxin domain of Ceruloplasmin
- cd04225
Location:732 → 903
- CuRO_5_ceruloplasmin; The fifth cupredoxin domain of Ceruloplasmin
- cd11021
Location:223 → 363
- CuRO_2_ceruloplasmin; The second cupredoxin domain of Ceruloplasmin
- cl19115
Location:574 → 717
- Cupredoxin; Cupredoxin superfamily
-
NM_010417.2 → NP_034547.2 hephaestin isoform 1 precursor
See identical proteins and their annotated locations for NP_034547.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1). Both variants 1 and 3 encode the same isoform.
- Source sequence(s)
-
AF082567, AK129194, CJ067085
- Consensus CDS
-
CCDS30289.1
- UniProtKB/Swiss-Prot
- A2AI63, Q6ZQ65, Q80Y80, Q8C4S2, Q9Z0Z4
- Related
- ENSMUSP00000033553.8, ENSMUST00000033553.14
- Conserved Domains (5) summary
-
- cd04222
Location:26 → 208
- CuRO_1_ceruloplasmin; The first cupredoxin domain of Ceruloplasmin
- cd04224
Location:377 → 571
- CuRO_3_ceruloplasmin; The third cupredoxin domain of Ceruloplasmin
- cd04225
Location:732 → 903
- CuRO_5_ceruloplasmin; The fifth cupredoxin domain of Ceruloplasmin
- cd11021
Location:223 → 363
- CuRO_2_ceruloplasmin; The second cupredoxin domain of Ceruloplasmin
- cl19115
Location:574 → 717
- Cupredoxin; Cupredoxin superfamily
-
NM_181273.4 → NP_851790.1 hephaestin isoform 2 precursor
See identical proteins and their annotated locations for NP_851790.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) represents use of an alternate promoter and uses an alternate 3' splice pattern, compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AK081330, CJ053588
- Consensus CDS
-
CCDS30290.1
- UniProtKB/TrEMBL
-
A2AI62
- Related
- ENSMUSP00000078301.6, ENSMUST00000079322.12
- Conserved Domains (3) summary
-
- cd04222
Location:26 → 208
- CuRO_1_ceruloplasmin; The first cupredoxin domain of Ceruloplasmin
- cd11021
Location:223 → 363
- CuRO_2_ceruloplasmin; The second cupredoxin domain of Ceruloplasmin
- cl19115
Location:377 → 529
- Cupredoxin; Cupredoxin superfamily
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000086.8 Reference GRCm39 C57BL/6J
- Range
-
95499042..95618091
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)