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CTSLP2 cathepsin L pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 1517, updated on 17-Sep-2024

Summary

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Official Symbol
CTSLP2provided by HGNC
Official Full Name
cathepsin L pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:2540
See related
AllianceGenome:HGNC:2540
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CTSLL2; CTSLL5; CTSLL7; CTSLP5; CTSLP7; CTSL1P2; CTSL1P5; CTSL1P7; bA144G6.6; bA342C24.4
Expression
Low expression observed in reference dataset See more
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Genomic context

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See CTSLP2 in Genome Data Viewer
Location:
10q11.22
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (47580671..47583419, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (48471987..48474737, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (48155943..48158691)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene BMS1P2-AGAP9 readthrough Neighboring gene annexin A8 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3327 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3328 Neighboring gene BMS1 pseudogene 2 Neighboring gene glutamate dehydrogenase 1 pseudogene 6 Neighboring gene dual specificity phosphatase 8 pseudogene 1 Neighboring gene long intergenic non-protein coding RNA 2675 Neighboring gene RNA, 7SL, cytoplasmic 453, pseudogene Neighboring gene shieldin complex subunit 2 pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A novel family of cathepsin L-like (CTSLL) sequences on human chromosome 10q and related transcripts. Bryce SD, et al. Genomics, 1994 Dec. PMID 7713509

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • cathepsin L pseudogene 5
  • cathepsin L pseudogene 7
  • cathepsin L-like 2
  • cathepsin L1 pseudogene 2
  • cathepsin L1 pseudogene 5
  • cathepsin L1 pseudogene 7

Clone Names

  • FLJ99150, KIAA0187

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033407.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK309109, BX547991

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    47580671..47583419 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    48471987..48474737 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_005638.2: Suppressed sequence

    Description
    NG_005638.2: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.

  2. NG_021156.1: Suppressed sequence

    Description
    NG_021156.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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