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LINC00635 long intergenic non-protein coding RNA 635 [ Homo sapiens (human) ]

Gene ID: 151658, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00635provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 635provided by HGNC
Primary source
HGNC:HGNC:27184
See related
Ensembl:ENSG00000241469 AllianceGenome:HGNC:27184
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 9.2) See more
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Genomic context

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See LINC00635 in Genome Data Viewer
Location:
3q13.12
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (107841662..107878068, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (110561411..110597815, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (107560509..107596915, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14586 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20202 Neighboring gene long intergenic non-protein coding RNA 1990 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:107188782-107189520 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:107189521-107190259 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:107195157-107195742 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20203 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14587 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14588 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14589 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14590 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20204 Neighboring gene BBX high mobility group box domain containing Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:107317361-107318183 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:107319851-107320351 Neighboring gene MPRA-validated peak4758 silencer Neighboring gene long intergenic non-protein coding RNA 636 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:107646067-107646688 Neighboring gene MPRA-validated peak4759 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:107700178-107700678 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:107700679-107701179 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20207 Neighboring gene Sharpr-MPRA regulatory region 1116 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:107722923-107723084 Neighboring gene uncharacterized LOC124906266

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015414.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) represents the longer transcript.
    Source sequence(s)
    BC045586, DB527077
    Related
    ENST00000464359.7

  2. NR_024276.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) lacks several alternate exons and an alternate exonic segment compared to variant 2.
    Source sequence(s)
    BC039365
    Related
    ENST00000488852.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    107841662..107878068 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    110561411..110597815 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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