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SEPTIN10 septin 10 [ Homo sapiens (human) ]

Gene ID: 151011, updated on 11-Apr-2024

Summary

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Official Symbol
SEPTIN10provided by HGNC
Official Full Name
septin 10provided by HGNC
Primary source
HGNC:HGNC:14349
See related
Ensembl:ENSG00000186522 MIM:611737; AllianceGenome:HGNC:14349
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SEPT10; Septin-10
Summary
This gene encodes a member of the septin family of cytoskeletal proteins with GTPase activity. This protein localizes to the cytoplasm and nucleus and displays GTP-binding and GTPase activity. A pseudogene for this gene is located on chromosome 8. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2012]
Expression
Ubiquitous expression in esophagus (RPKM 22.6), testis (RPKM 22.2) and 24 other tissues See more
Orthologs
mouse all
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Genomic context

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See SEPTIN10 in Genome Data Viewer
Location:
2q13
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (109542799..109613966, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (110003863..110075030, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (110300376..110371543, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene RAN binding protein 2 Neighboring gene SH3 domain containing ring finger 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16359 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16360 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16361 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:109876451-109876952 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:109876953-109877452 Neighboring gene Sharpr-MPRA regulatory region 14332 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:109891529-109891729 Neighboring gene Sharpr-MPRA regulatory region 6940 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:109933325-109934314 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:109934315-109935303 Neighboring gene small nuclear ribonucleoprotein polypeptide G pseudogene 9 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:109964015-109964260 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16362 Neighboring gene microRNA 4266 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:110012695-110013196 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:110013197-110013696 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:110031578-110032191 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:110032192-110032804 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:110046278-110046841 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:110065234-110065738 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:110063255-110063754 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16363 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16364 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16365 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16366 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:110275114-110275653 Neighboring gene Sharpr-MPRA regulatory region 2497 Neighboring gene MPRA-validated peak3814 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:110352345-110352845 Neighboring gene ribosomal protein L37 pseudogene 12 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:110370433-110371342 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11861 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11862 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11863 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16367 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16368 Neighboring gene sosondowah ankyrin repeat domain family member C Neighboring gene BMS1 pseudogene 19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Exosomal circCLIP1 regulates PM(2.5)-induced airway obstruction via targeting SEPT10 in vitro. Zhu H, et al. Ecotoxicol Environ Saf, 2023 Apr 1. PMID 36950992
  2. Surrogate molecular markers for IGHV mutational status in chronic lymphocytic leukemia for predicting time to first treatment. Morabito F, et al. Leuk Res, 2015 Aug. PMID 26038121
  3. Identification of a novel role of Septin 10 in paclitaxel-resistance in cancers through a functional genomics screen. Xu M, et al. Cancer Sci, 2012 Apr. PMID 22320903, Free PMC Article
  4. Linking the septin expression with carcinogenesis. Liu M, et al. Mol Biol Rep, 2010 Oct. PMID 20195767
  5. Are surrogates of IGHV gene mutational status useful in B-cell chronic lymphocytic leukemia? The example of Septin-10. Benedetti D, et al. Leukemia, 2008 Jan. PMID 17657217

See all (48) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. SEPTIN10-mediated crosstalk between cytoskeletal networks controls mechanotransduction and oncogenic YAP/TAZ signaling.
    Title: SEPTIN10-mediated crosstalk between cytoskeletal networks controls mechanotransduction and oncogenic YAP/TAZ signaling.
  2. miR-124-3p regulates the proliferation and differentiation of retinal progenitor cells through SEPT10.
    Title: miR-124-3p regulates the proliferation and differentiation of retinal progenitor cells through SEPT10.
  3. Exosomal circCLIP1 regulates PM2.5-induced airway obstruction via targeting SEPT10 in vitro.
    Title: Exosomal circCLIP1 regulates PM(2.5)-induced airway obstruction via targeting SEPT10 in vitro.
  4. we found that paclitaxel-resistant tumors had decreased expression of SEPT10.
    Title: Identification of a novel role of Septin 10 in paclitaxel-resistance in cancers through a functional genomics screen.
  5. Lack of SEPT10 transcript is associated with B-cell chronic lymphocytic leukemia
    Title: Are surrogates of IGHV gene mutational status useful in B-cell chronic lymphocytic leukemia? The example of Septin-10.
  6. Cloning and functional characterization of septin 10.
    Title: Cloning and functional characterization of human septin 10, a novel member of septin family cloned from dendritic cells.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ11619

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables molecular adaptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoskeleton-dependent cytokinesis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein localization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cell division site IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in microtubule cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in motile cilium IEA
Inferred from Electronic Annotation
more info
  
part_of septin complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in septin ring IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
septin-10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001321496.2 → NP_001308425.1  septin-10 isoform 3

    Status: REVIEWED

    Source sequence(s)
    AC011753, AC140485
    UniProtKB/TrEMBL
    B7Z371, E7EX45, Q59H84
    Conserved Domains (1) summary
    cd01850
    Location:6 → 198
    CDC_Septin; CDC/Septin GTPase family

  2. NM_001321498.2 → NP_001308427.1  septin-10 isoform 4

    Status: REVIEWED

    Source sequence(s)
    AC011753, AC140485
    Consensus CDS
    CCDS82497.1
    UniProtKB/TrEMBL
    B5ME97, E7EX04
    Related
    ENSP00000349116.4, ENST00000356688.8
    Conserved Domains (2) summary
    cd01850
    Location:63 → 331
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:44 → 397
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

  3. NM_001321499.2 → NP_001308428.1  septin-10 isoform 5

    Status: REVIEWED

    Source sequence(s)
    AC011753, AC140485
    UniProtKB/TrEMBL
    B7Z277, Q59H84
    Conserved Domains (1) summary
    cl21455
    Location:32 → 164
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  4. NM_001321500.2 → NP_001308429.1  septin-10 isoform 6

    Status: REVIEWED

    Source sequence(s)
    AC011753, AC140485
    UniProtKB/TrEMBL
    A8K7M3
    Conserved Domains (2) summary
    cd01850
    Location:40 → 308
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:21 → 374
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

  5. NM_001321501.2 → NP_001308430.1  septin-10 isoform 7

    Status: REVIEWED

    Source sequence(s)
    AC011753, AC140485
    UniProtKB/TrEMBL
    A8K7M3
    Conserved Domains (2) summary
    cd01850
    Location:21 → 289
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:2 → 355
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

  6. NM_001321502.2 → NP_001308431.1  septin-10 isoform 8

    Status: REVIEWED

    Source sequence(s)
    AC011753, AC140485
    UniProtKB/Swiss-Prot
    Q9P0V9
    Conserved Domains (1) summary
    cd01850
    Location:40 → 308
    CDC_Septin; CDC/Septin GTPase family

  7. NM_001321503.2 → NP_001308432.1  septin-10 isoform 9

    Status: REVIEWED

    Source sequence(s)
    AC011753, AC140485
    UniProtKB/TrEMBL
    Q9NSH2
    Conserved Domains (1) summary
    cl38936
    Location:10 → 141
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  8. NM_001321504.2 → NP_001308433.1  septin-10 isoform 10

    Status: REVIEWED

    Source sequence(s)
    AC011753, AC140485
    UniProtKB/TrEMBL
    Q59H84
    Conserved Domains (1) summary
    cl21455
    Location:1 → 138
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  9. NM_001321505.2 → NP_001308434.1  septin-10 isoform 11

    Status: REVIEWED

    Source sequence(s)
    AC011753, AC140485
    UniProtKB/TrEMBL
    Q59H84, Q9H9P7
    Conserved Domains (1) summary
    cl21455
    Location:1 → 138
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  10. NM_001321506.2 → NP_001308435.1  septin-10 isoform 12

    Status: REVIEWED

    Source sequence(s)
    AC011753, AC140485
    UniProtKB/TrEMBL
    Q59H84
    Conserved Domains (1) summary
    cl21455
    Location:10 → 141
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  11. NM_001321507.2 → NP_001308436.1  septin-10 isoform 13

    Status: REVIEWED

    Source sequence(s)
    AC011753, AC140485
    UniProtKB/TrEMBL
    Q59H84
    Conserved Domains (1) summary
    cd01850
    Location:6 → 198
    CDC_Septin; CDC/Septin GTPase family

  12. NM_001321508.2 → NP_001308437.1  septin-10 isoform 14

    Status: REVIEWED

    Source sequence(s)
    AC011753, AC140485
    UniProtKB/TrEMBL
    Q9NSH2
    Conserved Domains (1) summary
    cl38936
    Location:1 → 138
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  13. NM_001321509.2 → NP_001308438.1  septin-10 isoform 15

    Status: REVIEWED

    Source sequence(s)
    AC011753, AC140485
    UniProtKB/TrEMBL
    A8K7M3
    Conserved Domains (2) summary
    cd01850
    Location:21 → 289
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:2 → 355
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

  14. NM_001321510.2 → NP_001308439.1  septin-10 isoform 16

    Status: REVIEWED

    Source sequence(s)
    AC011753, AC140485
    UniProtKB/TrEMBL
    Q59H84
    Conserved Domains (1) summary
    cl21455
    Location:32 → 164
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  15. NM_001321511.2 → NP_001308440.1  septin-10 isoform 17

    Status: REVIEWED

    Source sequence(s)
    AC011753, AC140485
    UniProtKB/TrEMBL
    Q59H84
    Conserved Domains (1) summary
    cl21455
    Location:10 → 141
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  16. NM_001321512.2 → NP_001308441.1  septin-10 isoform 18

    Status: REVIEWED

    Source sequence(s)
    AC011753, AC140485
    Consensus CDS
    CCDS82496.1
    UniProtKB/TrEMBL
    A8K7M3, E7EW69
    Related
    ENSP00000396728.1, ENST00000415095.5
    Conserved Domains (2) summary
    cd01850
    Location:63 → 331
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:44 → 397
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

  17. NM_001321513.2 → NP_001308442.1  septin-10 isoform 19

    Status: REVIEWED

    Source sequence(s)
    AC011753, AC140485
    UniProtKB/TrEMBL
    A8K7M3
    Conserved Domains (2) summary
    cd01850
    Location:54 → 322
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:35 → 388
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

  18. NM_001321514.2 → NP_001308443.1  septin-10 isoform 20

    Status: REVIEWED

    Source sequence(s)
    AC011753, AC140485
    UniProtKB/TrEMBL
    A8K7M3
    Conserved Domains (2) summary
    cd01850
    Location:48 → 316
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:29 → 382
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

  19. NM_001321515.2 → NP_001308444.1  septin-10 isoform 21

    Status: REVIEWED

    Source sequence(s)
    AC011753, AC140485
    UniProtKB/TrEMBL
    A8K7M3
    Conserved Domains (2) summary
    cd01850
    Location:31 → 299
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:12 → 365
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

  20. NM_144710.5 → NP_653311.1  septin-10 isoform 1

    See identical proteins and their annotated locations for NP_653311.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) encodes isoform 1.
    Source sequence(s)
    AC011753, AC140485
    Consensus CDS
    CCDS46383.1
    UniProtKB/Swiss-Prot
    B3KRQ9, Q86VP5, Q9HAH6, Q9P0V9
    UniProtKB/TrEMBL
    A8K7M3
    Related
    ENSP00000380824.2, ENST00000397712.7
    Conserved Domains (1) summary
    cd01850
    Location:63 → 331
    CDC_Septin; CDC/Septin GTPase family

  21. NM_178584.4 → NP_848699.1  septin-10 isoform 2

    See identical proteins and their annotated locations for NP_848699.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) lacks an in-frame segment in the coding region, compared to variant 1. Isoform 2 is shorter than isoform 1.
    Source sequence(s)
    AC011753, AC140485
    Consensus CDS
    CCDS42726.1
    UniProtKB/TrEMBL
    A8K7M3
    Related
    ENSP00000380826.2, ENST00000397714.6
    Conserved Domains (2) summary
    cd01850
    Location:40 → 308
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:21 → 374
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    109542799..109613966 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011510699.3 → XP_011509001.1  septin-10 isoform X3

    UniProtKB/TrEMBL
    E7EX04
    Conserved Domains (2) summary
    cd01850
    Location:40 → 308
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:21 → 374
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

  2. XM_011510702.3 → XP_011509004.1  septin-10 isoform X10

    Conserved Domains (1) summary
    cl21455
    Location:32 → 164
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  3. XM_011510701.4 → XP_011509003.1  septin-10 isoform X9

    Conserved Domains (1) summary
    cd01850
    Location:6 → 198
    CDC_Septin; CDC/Septin GTPase family

  4. XM_011510704.4 → XP_011509006.1  septin-10 isoform X11

    See identical proteins and their annotated locations for XP_011509006.1

    Conserved Domains (1) summary
    cd01850
    Location:63 → 331
    CDC_Septin; CDC/Septin GTPase family

  5. XM_006712317.3 → XP_006712380.1  septin-10 isoform X6

    UniProtKB/TrEMBL
    E7EX04
    Related
    ENSP00000407790.1, ENST00000437928.5
    Conserved Domains (2) summary
    cd01850
    Location:63 → 331
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:44 → 397
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

  6. XM_011510700.3 → XP_011509002.1  septin-10 isoform X5

    UniProtKB/TrEMBL
    E7EX04
    Conserved Domains (2) summary
    cd01850
    Location:21 → 289
    CDC_Septin; CDC/Septin GTPase family
    pfam17380
    Location:227 → 361
    DUF5401; Family of unknown function (DUF5401)

  7. XM_047443487.1 → XP_047299443.1  septin-10 isoform X9

  8. XM_011510698.3 → XP_011509000.1  septin-10 isoform X2

    UniProtKB/TrEMBL
    E7EX04
    Conserved Domains (2) summary
    cd01850
    Location:48 → 316
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:29 → 382
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

  9. XM_047443486.1 → XP_047299442.1  septin-10 isoform X8

  10. XM_047443483.1 → XP_047299439.1  septin-10 isoform X4

  11. XM_047443488.1 → XP_047299444.1  septin-10 isoform X12

  12. XM_047443485.1 → XP_047299441.1  septin-10 isoform X7

  13. XM_011510703.3 → XP_011509005.1  septin-10 isoform X1

    UniProtKB/TrEMBL
    E7EX04
    Conserved Domains (2) summary
    cd01850
    Location:54 → 322
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:35 → 388
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

  14. XM_047443484.1 → XP_047299440.1  septin-10 isoform X6

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    110003863..110075030 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054340716.1 → XP_054196691.1  septin-10 isoform X3

  2. XM_054340725.1 → XP_054196700.1  septin-10 isoform X10

  3. XM_054340723.1 → XP_054196698.1  septin-10 isoform X9

  4. XM_054340726.1 → XP_054196701.1  septin-10 isoform X11

  5. XM_054340720.1 → XP_054196695.1  septin-10 isoform X6

  6. XM_054340719.1 → XP_054196694.1  septin-10 isoform X6

  7. XM_054340718.1 → XP_054196693.1  septin-10 isoform X5

  8. XM_054340724.1 → XP_054196699.1  septin-10 isoform X9

  9. XM_054340715.1 → XP_054196690.1  septin-10 isoform X2

  10. XM_054340722.1 → XP_054196697.1  septin-10 isoform X8

  11. XM_054340717.1 → XP_054196692.1  septin-10 isoform X4

  12. XM_054340727.1 → XP_054196702.1  septin-10 isoform X12

  13. XM_054340721.1 → XP_054196696.1  septin-10 isoform X7

  14. XM_054340714.1 → XP_054196689.1  septin-10 isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9P0V9.2 GenPept UniProtKB/Swiss-Prot:Q9P0V9

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