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ACA1_262540 tetratricopeptide repeat domain containing protein [ Acanthamoeba castellanii str. Neff ]

Gene ID: 14920376, updated on 17-May-2024

Summary

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Gene symbol
ACA1_262540
Gene description
tetratricopeptide repeat domain containing protein
Primary source
AmoebaDB:ACA1_262540
Locus tag
ACA1_262540
See related
VEuPathDB:ACA1_262540
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Acanthamoeba castellanii str. Neff (strain: Neff, culture-collection: ATCC:30010)
Lineage
Eukaryota; Amoebozoa; Discosea; Longamoebia; Centramoebida; Acanthamoebidae; Acanthamoeba
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Genomic context

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See ACA1_262540 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
4

NW_004457532.1Genomic Context describing neighboring genes Neighboring gene core histone h2a/h2b/h3/h4 superfamily protein Neighboring gene SH3 domain containing protein Neighboring gene tRNA (guanineN1)-methyltransferase Neighboring gene transcription factor tfiib repeat domain containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004457532.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling. Clarke M, et al. Genome Biol, 2013 Feb 1. PMID 23375108, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetratricopeptide repeat domain containing protein
XP_004341281.1
  • encoded by transcript ACA1_262540A

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_004457532.1 Reference assembly

    Range
    56442..58886 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004341233.1 → XP_004341281.1  tetratricopeptide repeat domain containing protein [Acanthamoeba castellanii str. Neff]

    See identical proteins and their annotated locations for XP_004341281.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    L8H429
    Conserved Domains (4) summary
    sd00006
    Location:577 → 603
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:358 → 399
    DUF1736; Domain of unknown function (DUF1736)
    pfam13181
    Location:618 → 645
    TPR_8; Tetratricopeptide repeat
    pfam13414
    Location:577 → 644
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

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