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LINC02210 long intergenic non-protein coding RNA 2210 [ Homo sapiens (human) ]

Gene ID: 147081, updated on 16-Jan-2024

Summary

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Official Symbol
LINC02210provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2210provided by HGNC
Primary source
HGNC:HGNC:26327
See related
Ensembl:ENSG00000293460 AllianceGenome:HGNC:26327
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C17orf69; CRHR1-IT1
Expression
Ubiquitous expression in skin (RPKM 2.2), brain (RPKM 2.1) and 23 other tissues See more
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Genomic context

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Location:
17q21.31
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (45620329..45646231)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (46482013..46507919)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (43697695..43723597)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:43677957-43678654 Neighboring gene mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2 Neighboring gene LINC02210-CRHR1 readthrough Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:43695849-43696828 Neighboring gene ribosomal protein S26 pseudogene 8 Neighboring gene ADP ribosylation factor 2, pseudogene Neighboring gene uncharacterized LOC105371802 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr17:43782244-43783443 Neighboring gene Sharpr-MPRA regulatory region 9533 Neighboring gene uncharacterized LOC107985028

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies. International Parkinson Disease Genomics Consortium, et al. Lancet, 2011 Feb 19. PMID 21292315, Free PMC Article
  2. Genome-wide association study reveals genetic risk underlying Parkinson's disease. Simón-Sánchez J, et al. Nat Genet, 2009 Dec. PMID 19915575, Free PMC Article
  3. The transcriptome of human CD34+ hematopoietic stem-progenitor cells. Kim YC, et al. Proc Natl Acad Sci U S A, 2009 May 19. PMID 19416867, Free PMC Article
  4. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association study reveals genetic risk underlying Parkinson's disease.
EBI GWAS Catalog
Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Readthrough LINC02210-CRHR1

Readthrough gene: LINC02210-CRHR1, Included gene: CRHR1

Other Names

  • CRHR1 intronic transcript 1 (non-protein coding)
  • LINC.tmp695175

Clone Names

  • FLJ18493, FLJ25168, FLJ30754, FLJ34210, FLJ36594, FLJ60266, FLJ60308, MGC57346

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026680.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC126544, AK311451, BC012843, GD136344

  2. NR_027295.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC012843, BC045575, GD136344
    Related
    ENST00000455565.5

  3. NR_138257.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC126544

  4. NR_138258.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC126544

  5. NR_138259.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC126544

  6. NR_138260.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC126544

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    45620329..45646231
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_167251.2 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    1141731..1168475 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187663.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    322453..348359
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    46482013..46507919
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_152466.1: Suppressed sequence

    Description
    NM_152466.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.

  2. NR_026906.2: Suppressed sequence

    Description
    NR_026906.2: This RefSeq was removed because it represented a partial transcript.
Nucleotide Protein
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