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PF_RS08240 ATP-dependent DNA ligase [ Pyrococcus furiosus DSM 3638 ]

Gene ID: 1469512, updated on 27-Apr-2024

Summary

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Gene symbol
PF_RS08240
Gene description
ATP-dependent DNA ligase
Locus tag
PF_RS08240
Gene type
protein coding
Organism
Pyrococcus furiosus DSM 3638 (strain: DSM 3638, type-material: type strain of Pyrococcus furiosus)
Lineage
Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus
Old locus tag
PF1635
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Genomic context

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Sequence:
NC_003413.1 (1525737..1527422)

NC_003413.1Genomic Context describing neighboring genes Neighboring gene DUF354 domain-containing protein Neighboring gene stage II sporulation protein M Neighboring gene hypothetical protein Neighboring gene isopentenyl phosphate kinase Neighboring gene mevalonate kinase Neighboring gene MEMO1 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003413.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Overexpression, purification and crystallization of an archaeal DNA ligase from Pyrococcus furiosus. Nishida H, et al. Acta Crystallogr Sect F Struct Biol Cryst Commun, 2005 Dec 1. PMID 16511246, Free PMC Article
  2. The closed structure of an archaeal DNA ligase from Pyrococcus furiosus. Nishida H, et al. J Mol Biol, 2006 Jul 28. PMID 16820169
  3. Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences. Maeder DL, et al. Genetics, 1999 Aug. PMID 10430560, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. crystallization of an archaeal DNA ligase from Pyrococcus furiosus
    Title: Overexpression, purification and crystallization of an archaeal DNA ligase from Pyrococcus furiosus.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
ATP-dependent DNA ligase
WP_011012782.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003413.1 Reference assembly

    Range
    1525737..1527422
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_011012782.1 ATP-dependent DNA ligase [Pyrococcus furiosus]

    See identical proteins and their annotated locations for WP_011012782.1

    UniProtKB/Swiss-Prot
    P56709
    UniProtKB/TrEMBL
    A0A5C0XQY5, I6V1U3
    Conserved Domains (1) summary
    PRK01109
    Location:1 → 560
    PRK01109; ATP-dependent DNA ligase; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P56709.1

Gene LinkOut

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