U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

VNG_RS11075 IS4-like element ISH32 family transposase [ Halobacterium salinarum NRC-1 ]

Gene ID: 1449321, updated on 17-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
VNG_RS11075
Gene description
IS4-like element ISH32 family transposase
Locus tag
VNG_RS11075
Gene type
protein coding
Organism
Halobacterium salinarum NRC-1 (strain: NRC-1; ATCC 700922, culture-collection: ATCC:700922)
Lineage
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium
Old locus tag
VNG6148H; VNG_6148H
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
plasmid: pNRC200
Sequence:
NC_002608.1 (123755..125089, complement)

NC_002608.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene IS4-like element ISH8B family transposase Neighboring gene DrmE family protein Neighboring gene ISH3-like element ISH27-2 family transposase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_002608.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A manual curation strategy to improve genome annotation: application to a set of haloarchael genomes. Pfeiffer F, et al. Life (Basel), 2015 Jun 2. PMID 26042526, Free PMC Article
  2. Evolution in the laboratory: the genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1. Pfeiffer F, et al. Genomics, 2008 Apr. PMID 18313895
  3. Exploring bacterial insertion sequences with ISfinder: objectives, uses, and future developments. Siguier P, et al. Methods Mol Biol, 2012. PMID 22367867

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
IS4-like element ISH32 family transposase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002608.1 Reference assembly

    Range
    123755..125089 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_012289608.1 MULTISPECIES: IS4-like element ISH32 family transposase [Halobacteriales]

    See identical proteins and their annotated locations for WP_012289608.1

    UniProtKB/TrEMBL
    A0A4D6GW63, A0A510NAU0, B0R9J9, L0JT90
    Conserved Domains (1) summary
    NF033592
    Location:17 → 360
    transpos_IS4_1; IS4 family transposase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases