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thpR RNA 2',3'-cyclic phosphodiesterase [ Pyrococcus horikoshii OT3 ]

Gene ID: 1444002, updated on 24-Dec-2022

Summary

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Gene symbol
thpR
Gene description
RNA 2',3'-cyclic phosphodiesterase
Locus tag
PH_RS00480
Gene type
protein coding
Organism
Pyrococcus horikoshii OT3 (strain: OT3, type-material: type strain of Pyrococcus horikoshii)
Lineage
Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus
Old locus tag
PH0099
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Genomic context

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Sequence:
NC_000961.1 (83374..83928)

NC_000961.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene type II toxin-antitoxin system VapC family toxin Neighboring gene CCA tRNA nucleotidyltransferase Neighboring gene class II glutamine amidotransferase Neighboring gene restriction endonuclease Neighboring gene metallophosphoesterase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000961.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The structure of Pyrococcus horikoshii 2'-5' RNA ligase at 1.94 A resolution reveals a possible open form with a wider active-site cleft. Gao YG, et al. Acta Crystallogr Sect F Struct Biol Cryst Commun, 2006 Dec 1. PMID 17142895, Free PMC Article
  2. Structure of a putative 2'-5' RNA ligase from Pyrococcus horikoshii. Rehse PH, et al. Acta Crystallogr D Biol Crystallogr, 2005 Sep. PMID 16131753
  3. Crystal structure of the 2'-5' RNA ligase from Thermus thermophilus HB8. Kato M, et al. J Mol Biol, 2003 Jun 20. PMID 12798681
  4. The 2'-5' RNA ligase of Escherichia coli. Purification, cloning, and genomic disruption. Arn EA, et al. J Biol Chem, 1996 Dec 6. PMID 8940112
  5. Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3. Kawarabayasi Y, et al. DNA Res, 1998 Apr 30. PMID 9679194

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. comparison of structural similarities with a cyclic phosphodiesterase from Arabidopsis thaliana
    Title: Structure of a putative 2'-5' RNA ligase from Pyrococcus horikoshii.
  2. The crystal structure of the 2'-5' RNA ligase PH0099 from Pyrococcus horikoshii OT3 was solved at 1.94 A resolution
    Title: The structure of Pyrococcus horikoshii 2'-5' RNA ligase at 1.94 A resolution reveals a possible open form with a wider active-site cleft.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
RNA 2',3'-cyclic phosphodiesterase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000961.1 Reference assembly

    Range
    83374..83928
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_010884220.1 RNA 2',3'-cyclic phosphodiesterase [Pyrococcus horikoshii]

    See identical proteins and their annotated locations for WP_010884220.1

    UniProtKB/Swiss-Prot
    O57823
    UniProtKB/TrEMBL
    A0A832TAN1
    Conserved Domains (1) summary
    TIGR02258
    Location:1 → 182
    2_5_ligase; 2'-5' RNA ligase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O57823.1

Gene LinkOut

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