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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001253737.1 → NP_001240666.1  low affinity immunoglobulin epsilon Fc receptor isoform B
See identical proteins and their annotated locations for NP_001240666.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) has a different 5' end with an alternate start codon, compared to variant 1. The resulting protein (isoform B) has a shorter and distinct N-terminus when it is compared to isoform A. Although variants 2 and 3 encode a protein of the same length (330 aa), the sequence of the two proteins (isoform B and isoform C) are different.
- Source sequence(s)
-
AC087183, M34163
- Consensus CDS
-
CCDS85494.1
- UniProtKB/TrEMBL
-
A0A140LI63
- Related
- ENSMUSP00000146568.2, ENSMUST00000208492.2
- Conserved Domains (2) summary
-
- cd03590
Location:185 → 305
- CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
- cl23720
Location:72 → 169
- RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
-
NM_001253739.1 → NP_001240668.1  low affinity immunoglobulin epsilon Fc receptor isoform C
See identical proteins and their annotated locations for NP_001240668.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) has a different 5' end with an alternate start codon, compared to variant 1. The resulting protein (isoform C) has a shorter and distinct N-terminus when it is compared to isoform A. Although variants 2 and 3 encode a protein of the same length (330 aa), the sequence of the two proteins (isoform B and isoform C) are different.
- Source sequence(s)
-
AC087183, M34163
- Consensus CDS
-
CCDS85491.1
- UniProtKB/TrEMBL
-
A0A140LI63
- Related
- ENSMUSP00000146647.2, ENSMUST00000208145.2
- Conserved Domains (2) summary
-
- cd03590
Location:185 → 305
- CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
- cl23720
Location:72 → 169
- RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
-
NM_001253743.1 → NP_001240672.1  low affinity immunoglobulin epsilon Fc receptor isoform A
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) uses a different splice site in the 5' coding region, compared to variant 1. The resulting protein (isoform D) is shorter when it is compared to isoform A.
- Source sequence(s)
-
AC087183, M34163
- UniProtKB/TrEMBL
-
A0A140LI63
- Related
- ENSMUSP00000146689.2, ENSMUST00000207635.2
- Conserved Domains (2) summary
-
- cd03590
Location:159 → 279
- CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
- cl23720
Location:46 → 143
- RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
-
NM_001253745.1 → NP_001240674.1  low affinity immunoglobulin epsilon Fc receptor isoform E
See identical proteins and their annotated locations for NP_001240674.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) has a different 5' end with an alternate start codon and lacks an alternate exon in the coding region, compared to variant 1. The resulting protein (isoform E) has a shorter and distinct N-terminus when it is compared to isoform A. Although variants 5 and 6 encode a protein of the same length (309 aa), the sequence of the two proteins (isoform E and isoform F) are different. Isoform E has also been called Fc epsilon receptor II subtype b variant b delta 5.
- Source sequence(s)
-
AC087183, M34163
- Consensus CDS
-
CCDS85492.1
- UniProtKB/TrEMBL
- A0A140LI63, Q8VH33
- Related
- ENSMUSP00000146380.2, ENSMUST00000208603.2
- Conserved Domains (2) summary
-
- cd03590
Location:164 → 284
- CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
- cl23720
Location:72 → 148
- RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
-
NM_001253746.1 → NP_001240675.1  low affinity immunoglobulin epsilon Fc receptor isoform F
See identical proteins and their annotated locations for NP_001240675.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) has a different 5' end with an alternate start codon and lacks an alternate exon in the coding region, compared to variant 1. The resulting protein (isoform F) has a shorter and distinct N-terminus when it is compared to isoform A. Although variants 5 and 6 encode a protein of the same length (309 aa), the sequence of the two proteins (isoform E and isoform F) are different. Isoform F has also been called Fc epsilon receptor II subtype b variant b delta 6.
- Source sequence(s)
-
AC087183, M34163
- Consensus CDS
-
CCDS85493.1
- UniProtKB/TrEMBL
- A0A140LI63, Q8VH32
- Related
- ENSMUSP00000146822.2, ENSMUST00000208438.2
- Conserved Domains (2) summary
-
- cd03590
Location:164 → 284
- CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
- cl23765
Location:70 → 127
- iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits
-
NM_001253747.1 → NP_001240676.1  low affinity immunoglobulin epsilon Fc receptor isoform G
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) lacks an alternate exon in the 5' coding region, compared to variant 1. The resulting protein (isoform G) is shorter when it is compared to isoform A.
- Source sequence(s)
-
AC087183, M34163
- UniProtKB/TrEMBL
-
A0A140LJ27
- Related
- ENSMUSP00000147052.2, ENSMUST00000207463.2
- Conserved Domains (2) summary
-
- cd03590
Location:146 → 266
- CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
- cl23720
Location:33 → 130
- RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
-
NM_013517.4 → NP_038545.1  low affinity immunoglobulin epsilon Fc receptor isoform A
See identical proteins and their annotated locations for NP_038545.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and it encodes the longest protein (isoform A).
- Source sequence(s)
-
AC087183, M34163
- Consensus CDS
-
CCDS22071.1
- UniProtKB/Swiss-Prot
- P20693, Q61556, Q61557
- UniProtKB/TrEMBL
-
A0A140LI63
- Related
- ENSMUSP00000005678.5, ENSMUST00000005678.6
- Conserved Domains (2) summary
-
- cd03590
Location:186 → 306
- CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
- cl23720
Location:73 → 170
- RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000074.7Â Reference GRCm39 C57BL/6J
- Range
-
3730280..3744174 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006508697.5 → XP_006508760.1  low affinity immunoglobulin epsilon Fc receptor isoform X1
- UniProtKB/TrEMBL
-
A0A140LI63
- Conserved Domains (2) summary
-
- cd03590
Location:190 → 310
- CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
- TIGR04211
Location:77 → 175
- SH3_and_anchor; SH3 domain protein