DCAF4L2 DDB1 and CUL4 associated factor 4 like 2 [Homo sapiens (human)] - Gene

Summary

Official Symbol: DCAF4L2provided by HGNC
Official Full Name: DDB1 and CUL4 associated factor 4 like 2provided by HGNC
Primary source: HGNC:HGNC:26657
See related: Ensembl:ENSG00000176566 MIM:620421; AllianceGenome:HGNC:26657
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: WDR21C
Orthologs: all
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Genomic context

Location:: 8q21.3

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	8	NC_000008.11 (87870747..87874015, complement)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	8	NC_060932.1 (88994111..88997374, complement)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	8	NC_000008.10 (88882975..88886243, complement)

Chromosome 8 - NC_000008.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

LncRNA ST8SIA6-AS1 promotes hepatocellular carcinoma progression by regulating MAGEA3 and DCAF4L2 expression.
Title: LncRNA ST8SIA6-AS1 promotes hepatocellular carcinoma progression by regulating MAGEA3 and DCAF4L2 expression.
In addition, eight genes classified as 'second tier' hits in the original study (PAX7, THADA, COL8A1/FILIP1L, DCAF4L2, GADD45G, NTN1, RBFOX3 and FOXE1) showed evidence of linkage and association in this replication sample.
Title: Confirming genes influencing risk to cleft lip with/without cleft palate in a case-parent trio study.

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Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by GOA

Component	Evidence Code	Pubs
part_of Cul4-RING E3 ubiquitin ligase complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: DDB1- and CUL4-associated factor 4-like protein 2

Names: WD repeat domain 21C; WD repeat-containing protein 21C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_152418.4 → NP_689631.1 DDB1- and CUL4-associated factor 4-like protein 2

See identical proteins and their annotated locations for NP_689631.1

Status: VALIDATED

Source sequence(s)

AC005066, AK093094, AL833507, BC035011

Consensus CDS

CCDS6245.1

UniProtKB/Swiss-Prot

Q8NA75

Related

ENSP00000316496.3, ENST00000319675.5

Conserved Domains (3) summary

COG2319
Location:186 → 300

WD40; WD40 repeat [General function prediction only]

sd00039
Location:223 → 267

7WD40; WD40 repeat [structural motif]

cl25539
Location:269 → 369

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...