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pan3 poly(A) specific ribonuclease subunit PAN3 [ Brachionichthys hirsutus ]

Gene ID: 137903579, updated on 9-Oct-2024

Summary

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Gene symbol
pan3
Gene description
poly(A) specific ribonuclease subunit PAN3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachionichthys hirsutus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Lophiiformes; Antennarioidei; Brachionichthyidae; Brachionichthys
Orthologs
human zebrafish all
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Genomic context

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See pan3 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_09 current CSIRO-AGI_Bhir_v1 (GCF_040956055.1) 14 NC_090910.1 (8413773..8420762, complement)

Chromosome 14 - NC_090910.1Genomic Context describing neighboring genes Neighboring gene transmembrane protease serine 9-like Neighboring gene fms related receptor tyrosine kinase 1 Neighboring gene fms related receptor tyrosine kinase 3 Neighboring gene ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_090910.1 Chromosome 14 Reference CSIRO-AGI_Bhir_v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A) binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of PAN complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PAN2-PAN3 deadenylation complex subunit PAN3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040956055.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CSIRO-AGI_Bhir_v1

Genomic

  1. NC_090910.1 Reference CSIRO-AGI_Bhir_v1

    Range
    8413773..8420762 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068747708.1 → XP_068603809.1  PAN2-PAN3 deadenylation complex subunit PAN3

Nucleotide Protein
Heading Accession and Version

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