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cacna1da calcium channel, voltage-dependent, L type, alpha 1D subunit, a [ Brachionichthys hirsutus ]

Gene ID: 137898871, updated on 9-Oct-2024

Summary

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Gene symbol
cacna1da
Gene description
calcium channel, voltage-dependent, L type, alpha 1D subunit, a
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachionichthys hirsutus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Lophiiformes; Antennarioidei; Brachionichthyidae; Brachionichthys
Orthologs
zebrafish all
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Genomic context

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See cacna1da in Genome Data Viewer
Location:
chromosome: 8
Exon count:
49
Annotation release Status Assembly Chr Location
RS_2024_09 current CSIRO-AGI_Bhir_v1 (GCF_040956055.1) 8 NC_090904.1 (7530036..7568439)

Chromosome 8 - NC_090904.1Genomic Context describing neighboring genes Neighboring gene protein bicaudal D homolog 2-like Neighboring gene transketolase-like Neighboring gene calcium channel, voltage dependent, alpha2/delta subunit 3 Neighboring gene linker histone H1M

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_090904.1 Chromosome 8 Reference CSIRO-AGI_Bhir_v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium channel, voltage-dependent, L type, alpha 1D subunit, a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040956055.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CSIRO-AGI_Bhir_v1

Genomic

  1. NC_090904.1 Reference CSIRO-AGI_Bhir_v1

    Range
    7530036..7568439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068742925.1 → XP_068599026.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a

Nucleotide Protein
Heading Accession and Version