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cacna1ba calcium channel, voltage-dependent, N type, alpha 1B subunit, a [ Clinocottus analis (woolly sculpin) ]

Gene ID: 137801439, updated on 25-Sep-2024

Summary

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Gene symbol
cacna1ba
Gene description
calcium channel, voltage-dependent, N type, alpha 1B subunit, a
Gene type
protein coding
RefSeq status
MODEL
Organism
Clinocottus analis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cottidae; Clinocottus
Orthologs
zebrafish all
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Genomic context

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See cacna1ba in Genome Data Viewer
Location:
chromosome: Un
Exon count:
50
Annotation release Status Assembly Chr Location
RS_2024_09 current fCliAna1.0.p (GCF_023055335.1) Unplaced Scaffold NW_027176165.1 (510207..604923)

NW_027176165.1Genomic Context describing neighboring genes Neighboring gene matrix metallopeptidase 11a Neighboring gene euchromatic histone-lysine N-methyltransferase 1a Neighboring gene mannosidase, alpha, class 1B, member 1b Neighboring gene dipeptidyl-peptidase 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_027176165 Unplaced Scaffold Reference fCliAna1.0.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal cell body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium channel, voltage-dependent, N type, alpha 1B subunit, a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023055335.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCliAna1.0.p

Genomic

  1. NW_027176165.1 Reference fCliAna1.0.p

    Range
    510207..604923
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068598862.1 → XP_068454963.1  calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X14

  2. XM_068598858.1 → XP_068454959.1  calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X11

  3. XM_068598849.1 → XP_068454950.1  calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X1

  4. XM_068598859.1 → XP_068454960.1  calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X12

  5. XM_068598860.1 → XP_068454961.1  calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X13

  6. XM_068598850.1 → XP_068454951.1  calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X3

  7. XM_068598848.1 → XP_068454949.1  calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X2

  8. XM_068598847.1 → XP_068454948.1  calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X1

  9. XM_068598855.1 → XP_068454956.1  calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X8

  10. XM_068598851.1 → XP_068454952.1  calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X4

  11. XM_068598852.1 → XP_068454953.1  calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X5

  12. XM_068598856.1 → XP_068454957.1  calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X9

  13. XM_068598854.1 → XP_068454955.1  calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X7

  14. XM_068598853.1 → XP_068454954.1  calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X6

  15. XM_068598857.1 → XP_068454958.1  calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X10

Nucleotide Protein
Heading Accession and Version