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cacna1da calcium channel, voltage-dependent, L type, alpha 1D subunit, a [ Clinocottus analis (woolly sculpin) ]

Gene ID: 137796127, updated on 25-Sep-2024

Summary

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Gene symbol
cacna1da
Gene description
calcium channel, voltage-dependent, L type, alpha 1D subunit, a
Gene type
protein coding
RefSeq status
MODEL
Organism
Clinocottus analis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cottidae; Clinocottus
Orthologs
zebrafish all
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Genomic context

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See cacna1da in Genome Data Viewer
Location:
chromosome: Un
Exon count:
49
Annotation release Status Assembly Chr Location
RS_2024_09 current fCliAna1.0.p (GCF_023055335.1) Unplaced Scaffold NW_027176042.1 (13922468..13978544, complement)

NW_027176042.1Genomic Context describing neighboring genes Neighboring gene calcium channel, voltage dependent, alpha2/delta subunit 3 Neighboring gene parapinopsin-like Neighboring gene transketolase a Neighboring gene bicaudal D homolog 2 (Drosophila)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_027176042 Unplaced Scaffold Reference fCliAna1.0.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium channel, voltage-dependent, L type, alpha 1D subunit, a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023055335.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCliAna1.0.p

Genomic

  1. NW_027176042.1 Reference fCliAna1.0.p

    Range
    13922468..13978544 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068593822.1 → XP_068449923.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X4

  2. XM_068593821.1 → XP_068449922.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X3

  3. XM_068593819.1 → XP_068449920.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X2

  4. XM_068593818.1 → XP_068449919.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X1

  5. XM_068593828.1 → XP_068449929.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X10

  6. XM_068593823.1 → XP_068449924.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X5

  7. XM_068593829.1 → XP_068449930.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X11

  8. XM_068593827.1 → XP_068449928.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X9

  9. XM_068593825.1 → XP_068449926.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X7

  10. XM_068593826.1 → XP_068449927.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X8

  11. XM_068593824.1 → XP_068449925.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X6

Nucleotide Protein
Heading Accession and Version

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